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  5. AMTR_s00078p00189390

AMTR_s00078p00189390 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00078.196

Description : Regulator of telomere elongation helicase 1 homolog OS=Oryza sativa subsp. japonica


Gene families : OG0002453 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002453_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00078p00189390

Target Alias Description ECC score Gene Family Method Actions
Adi_g057308 No alias regulatory helicase *(RTEL) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.16G032600.1 Ceric.16G032600 dsDNA helicase *(FANCJ) & original description:... 0.03 OrthoFinder output from all 47 species
Gb_36663 No alias Regulator of telomere elongation helicase 1 homolog... 0.03 OrthoFinder output from all 47 species
Solyc03g120200.2.1 Solyc03g120200 Regulator of telomere elongation helicase 1 homolog... 0.03 OrthoFinder output from all 47 species
Solyc10g079510.3.1 Solyc10g079510 Regulator of telomere elongation helicase 1 homolog... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006139 nucleobase-containing compound metabolic process IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
InterPro domains Description Start Stop
IPR010614 DEAD_2 89 250
IPR006555 ATP-dep_Helicase_C 510 705
No external refs found!