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  5. AMTR_s00078p00139590

AMTR_s00078p00139590 (ATH16, ATATH16,...)


Aliases : ATH16, ATATH16, evm_27.TU.AmTr_v1.0_scaffold00078.115

Description : ABC transporter A family member 12 OS=Arabidopsis thaliana


Gene families : OG0001879 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001879_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00078p00139590

Target Alias Description ECC score Gene Family Method Actions
AT3G47750 ABCA4, ATATH3 ATP binding cassette subfamily A4 0.03 OrthoFinder output from all 47 species
AT3G47770 ATH5, ATATH5, ABCA6 ABC2 homolog 5 0.03 OrthoFinder output from all 47 species
AT3G47780 ATATH6, ATH6 ABC2 homolog 6 0.06 OrthoFinder output from all 47 species
AT3G47790 ATH7, ATATH7 ABC2 homolog 7 0.05 OrthoFinder output from all 47 species
Aev_g01577 ATATH6, ATH6 subfamily ABCA transporter & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g04431 ATATH6, ATH6 subfamily ABCA transporter & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01029736001 ATH7, ATATH7 ABC transporter A family member 8 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os08g30780.1 ATATH6, ATH6,... subfamily ABCA transporter 0.02 OrthoFinder output from all 47 species
MA_119138g0010 ATATH6, ATH6 subfamily ABCA transporter 0.03 OrthoFinder output from all 47 species
Mp5g00540.1 ATH7, ATATH7 subfamily ABCA transporter 0.02 OrthoFinder output from all 47 species
Mp7g18420.1 ATH7, ATATH7 subfamily ABCA transporter 0.02 OrthoFinder output from all 47 species
Msp_g11278 ATATH6, ATH6 subfamily ABCA transporter & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g08039 ATATH6, ATH6 subfamily ABCA transporter & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g28561 ATATH6, ATH6 subfamily ABCA transporter & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g40039 ATH16, ATATH16 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g10749 ATATH6, ATH6 subfamily ABCA transporter & original description: none 0.03 OrthoFinder output from all 47 species
Smo171117 ATATH6, ATH6 Solute transport.primary active transport.ABC... 0.03 OrthoFinder output from all 47 species
Smo268954 ATATH6, ATH6 Solute transport.primary active transport.ABC... 0.05 OrthoFinder output from all 47 species
Zm00001e014485_P003 ATH7, ATATH7,... subfamily ABCA transporter 0.03 OrthoFinder output from all 47 species
Zm00001e022343_P002 ATATH6, ATH6,... subfamily ABCA transporter 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 14 64
No external refs found!