AMTR_s00078p00115450 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00078.88

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.REM transcription factor

Gene families : OG0000663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000663_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00078p00115450

Target	Alias	Description	ECC score	Gene Family Method
AT5G42700	No alias	AP2/B3-like transcriptional factor family protein	0.03	OrthoFinder output from all 47 species
AT5G58280	No alias	AP2/B3-like transcriptional factor family protein	0.04	OrthoFinder output from all 47 species
Ala_g04057	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g09751	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g01573	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g51859	No alias	REM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g06897	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g36068	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0198.g057387	No alias	REM-type transcription factor & original description:...	0.01	OrthoFinder output from all 47 species
Cba_g12551	No alias	REM-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ceric.07G043800.1	Ceric.07G043800	REM-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.14G017400.1	Ceric.14G017400	REM-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.35G050300.1	Ceric.35G050300	REM-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g18248	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g41437	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g43688	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01007552001	No alias	B3 domain-containing protein Os01g0905400 OS=Oryza...	0.01	OrthoFinder output from all 47 species
GSVIVT01022143001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
GSVIVT01031761001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
Gb_35990	No alias	transcription factor (REM)	0.04	OrthoFinder output from all 47 species
LOC_Os03g08620.1	LOC_Os03g08620	transcription factor (REM)	0.03	OrthoFinder output from all 47 species
LOC_Os05g40280.1	LOC_Os05g40280	transcription factor (REM)	0.03	OrthoFinder output from all 47 species
Len_g56640	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g28691	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g29370	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
MA_10433064g0010	No alias	transcription factor (REM)	0.04	OrthoFinder output from all 47 species
MA_175090g0010	No alias	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
MA_430451g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Mp2g08790.1	No alias	transcription factor (REM)	0.04	OrthoFinder output from all 47 species
Msp_g36795	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g34487	No alias	REM-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Nbi_g35599	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g39771	No alias	REM-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g28568	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g01929	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g11582	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g11583	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g14471	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0010.g004736	No alias	REM-type transcription factor & original description: CDS=35-988	0.05	OrthoFinder output from all 47 species
Sam_g14184	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g48173	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc04g079130.2.1	Solyc04g079130	transcription factor (REM)	0.05	OrthoFinder output from all 47 species
Solyc06g007530.2.1	Solyc06g007530	transcription factor (REM)	0.02	OrthoFinder output from all 47 species
Solyc06g034140.3.1	Solyc06g034140	transcription factor (REM)	0.06	OrthoFinder output from all 47 species
Spa_g00422	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g49592	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g00720	No alias	REM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g04671	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g11017	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g29854	No alias	REM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e000624_P003	Zm00001e000624	transcription factor (REM)	0.04	OrthoFinder output from all 47 species
Zm00001e020584_P001	Zm00001e020584	transcription factor (REM)	0.03	OrthoFinder output from all 47 species
Zm00001e040028_P004	Zm00001e040028	transcription factor (REM)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
CC	GO:0005875	microtubule associated complex	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016073	snRNA metabolic process	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0030515	snoRNA binding	IEP	HCCA
BP	GO:0031120	snRNA pseudouridine synthesis	IEP	HCCA
BP	GO:0040031	snRNA modification	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	288	380
IPR003340	B3_DNA-bd	40	118

External Links

No external refs found!

AMTR_s00078p00115450 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation