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  5. AMTR_s00078p00056260

AMTR_s00078p00056260 (SDE1, RDR6, SGS2,...)


Aliases : SDE1, RDR6, SGS2, evm_27.TU.AmTr_v1.0_scaffold00078.29

Description : RNA biosynthesis.siRNA biogenesis.RDR6 ssRNA polymerase


Gene families : OG0001039 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001039_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: AMTR_s00078p00056260

Target Alias Description ECC score Gene Family Method Actions
Lfl_g18070 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_20320g0020 SDE1, RDR6, SGS2 RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_9045725g0010 SDE1, RDR6, SGS2 RNA-dependent RNA polymerase 6 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Nbi_g01470 SDE1, RDR6, SGS2 ssRNA polymerase *(RDR6) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g09066 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g014870.3.1 SDE1, RDR6,... ssRNA polymerase (RDR6) 0.03 OrthoFinder output from all 47 species
Tin_g08538 ATRDRP1, RDR1 not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 433 1010
No external refs found!