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  5. AMTR_s00077p00196020

AMTR_s00077p00196020 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00077.239

Description : Pentatricopeptide repeat-containing protein At5g40400 OS=Arabidopsis thaliana


Gene families : OG0002597 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002597_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00077p00196020

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00141020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g01110... 0.04 OrthoFinder output from all 47 species
LOC_Os03g06910.1 LOC_Os03g06910 Pentatricopeptide repeat-containing protein At5g01110... 0.02 OrthoFinder output from all 47 species
LOC_Os05g19390.1 LOC_Os05g19390 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005694 chromosome IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 246 289
IPR002885 Pentatricopeptide_repeat 173 221
IPR002885 Pentatricopeptide_repeat 101 150
IPR002885 Pentatricopeptide_repeat 452 500
IPR002885 Pentatricopeptide_repeat 351 396
IPR002885 Pentatricopeptide_repeat 423 442
IPR002885 Pentatricopeptide_repeat 73 98
No external refs found!