AMTR_s00077p00161980 (RPT3,...)

Aliases : RPT3, evm_27.TU.AmTr_v1.0_scaffold00077.168

Description : Protein degradation.26S proteasome.regulatory particle.ATPase subunits.RPT3 regulatory component

Gene families : OG0002973 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002973_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00077p00161980

Target	Alias	Description	ECC score	Gene Family Method
AT5G58290	RPT3	regulatory particle triple-A ATPase 3	0.03	OrthoFinder output from all 47 species
Ceric.36G025600.1	RPT3, Ceric.36G025600	regulatory component *(RPT3) of 26S proteasome &...	0.04	OrthoFinder output from all 47 species
Cre09.g402450	RPT3	Protein degradation.26S proteasome.regulatory...	0.02	OrthoFinder output from all 47 species
Ehy_g25312	RPT3	regulatory component *(RPT3) of 26S proteasome &...	0.02	OrthoFinder output from all 47 species
LOC_Os02g21970.1	RPT3, LOC_Os02g21970	regulatory component RPT3 of 26S proteasome	0.04	OrthoFinder output from all 47 species
Solyc06g082630.4.1	RPT3, Solyc06g082630	regulatory component RPT3 of 26S proteasome	0.02	OrthoFinder output from all 47 species
Solyc06g082660.4.1	RPT3, Solyc06g082660	regulatory component RPT3 of 26S proteasome	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003924	GTPase activity	IEP	HCCA
MF	GO:0004298	threonine-type endopeptidase activity	IEP	HCCA
MF	GO:0004751	ribose-5-phosphate isomerase activity	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006091	generation of precursor metabolites and energy	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0009052	pentose-phosphate shunt, non-oxidative branch	IEP	HCCA
MF	GO:0016860	intramolecular oxidoreductase activity	IEP	HCCA
MF	GO:0016861	intramolecular oxidoreductase activity, interconverting aldoses and ketoses	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
MF	GO:0070003	threonine-type peptidase activity	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	200	333

External Links

No external refs found!