AMTR_s00077p00151750 (RPL10B,...)

Aliases : RPL10B, evm_27.TU.AmTr_v1.0_scaffold00077.155

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL10 component

Gene families : OG0001847 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001847_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00077p00151750
Cluster	HCCA: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
AT1G14320	SAC52, RPL10, RPL10A	Ribosomal protein L16p/L10e family protein	0.12	OrthoFinder output from all 47 species
AT1G26910	RPL10B	Ribosomal protein L16p/L10e family protein	0.03	OrthoFinder output from all 47 species
Adi_g019250	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aev_g35365	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g26652	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aob_g04834	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Aspi01Gene01249.t1	RPL10B, Aspi01Gene01249	component *(uL16) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Azfi_s0001.g000052	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ceric.10G071500.1	RPL10B, Ceric.10G071500	component *(uL16) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001424.5	RPL10C, SAG24	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Dde_g49972	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
GSVIVT01001137001	RPL10B	60S ribosomal protein L10 OS=Vitis riparia	0.04	OrthoFinder output from all 47 species
GSVIVT01024537001	RPL10B	Protein biosynthesis.cytosolic ribosome.large subunit...	0.03	OrthoFinder output from all 47 species
Gb_06067	RPL10B	component RPL10 of LSU proteome component	0.1	OrthoFinder output from all 47 species
LOC_Os05g07700.1	RPL10B, LOC_Os05g07700	component RPL10 of LSU proteome component	0.03	OrthoFinder output from all 47 species
LOC_Os11g11390.1	RPL10B, LOC_Os11g11390	component RPL10 of LSU proteome component	0.03	OrthoFinder output from all 47 species
MA_17326g0010	SAC52, RPL10, RPL10A	component RPL10 of LSU proteome component	0.09	OrthoFinder output from all 47 species
MA_8948319g0010	RPL10B	60S ribosomal protein L10 OS=Pinus taeda...	0.02	OrthoFinder output from all 47 species
Mp4g23990.1	RPL10B	component RPL10 of LSU proteome component	0.09	OrthoFinder output from all 47 species
Msp_g21522	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Nbi_g09642	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g10010	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Pir_g32123	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.01	OrthoFinder output from all 47 species
Pp3c11_4130V3.1	RPL10B, Pp3c11_4130	Ribosomal protein L16p/L10e family protein	0.06	OrthoFinder output from all 47 species
Pp3c2_29600V3.1	RPL10B, Pp3c2_29600	Ribosomal protein L16p/L10e family protein	0.05	OrthoFinder output from all 47 species
Pp3c7_22400V3.1	RPL10B, Pp3c7_22400	Ribosomal protein L16p/L10e family protein	0.05	OrthoFinder output from all 47 species
Ppi_g26211	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Smo437527	RPL10B	Protein biosynthesis.cytosolic ribosome.large subunit...	0.04	OrthoFinder output from all 47 species
Solyc06g007520.4.1	RPL10B, Solyc06g007520	component RPL10 of LSU proteome component	0.12	OrthoFinder output from all 47 species
Solyc06g082650.4.1	SAC52, RPL10,...	component RPL10 of LSU proteome component	0.11	OrthoFinder output from all 47 species
Solyc06g082670.3.1	RPL10B, Solyc06g082670	component RPL10 of LSU proteome component	0.11	OrthoFinder output from all 47 species
Spa_g18494	RPL10B	component *(uL16) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Spa_g51059	RPL10C, SAG24	component *(uL16) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Zm00001e004933_P001	RPL10B, Zm00001e004933	component RPL10 of LSU proteome component	0.03	OrthoFinder output from all 47 species
Zm00001e012474_P002	RPL10C, SAG24,...	component RPL10 of LSU proteome component	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0003954	NADH dehydrogenase activity	IEP	HCCA
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
CC	GO:0005787	signal peptidase complex	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006465	signal peptide processing	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	HCCA
MF	GO:0015453	oxidoreduction-driven active transmembrane transporter activity	IEP	HCCA
BP	GO:0016485	protein processing	IEP	HCCA
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	HCCA
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	HCCA
BP	GO:0051604	protein maturation	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	HCCA
CC	GO:1905368	peptidase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR016180	Ribosomal_L10e/L16	5	166

External Links

No external refs found!

AMTR_s00077p00151750 (RPL10B,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation