AMTR_s00077p00151100 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00077.154

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.REM transcription factor

Gene families : OG0000663 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000663_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00077p00151100
Cluster	HCCA: Cluster_34

Target	Alias	Description	ECC score	Gene Family Method
AT5G58280	No alias	AP2/B3-like transcriptional factor family protein	0.03	OrthoFinder output from all 47 species
Als_g51859	No alias	REM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g06897	No alias	REM-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ceric.14G017400.1	Ceric.14G017400	REM-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.38G010700.1	Ceric.38G010700	REM-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g41437	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g24428	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01009519001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
GSVIVT01022143001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	OrthoFinder output from all 47 species
GSVIVT01024536001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
Len_g01795	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g56640	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Mp2g08790.1	No alias	transcription factor (REM)	0.03	OrthoFinder output from all 47 species
Msp_g36795	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc06g007530.2.1	Solyc06g007530	transcription factor (REM)	0.04	OrthoFinder output from all 47 species
Spa_g12989	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g49592	No alias	REM-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g00720	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g11017	No alias	REM-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g29854	No alias	REM-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e000624_P003	Zm00001e000624	transcription factor (REM)	0.02	OrthoFinder output from all 47 species
Zm00001e021364_P001	Zm00001e021364	B3 domain-containing protein Os11g0197600 OS=Oryza...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0009719	response to endogenous stimulus	IEP	HCCA
BP	GO:0009725	response to hormone	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	129	218

External Links

No external refs found!

AMTR_s00077p00151100 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation