1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00077p00115030

AMTR_s00077p00115030 (TFIIS,...)


Aliases : TFIIS, evm_27.TU.AmTr_v1.0_scaffold00077.102

Description : Transcription elongation factor TFIIS OS=Arabidopsis thaliana


Gene families : OG0003523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003523_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00077p00115030

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0102.g044503 TFIIS TFIIs transcription elongation factor & original... 0.02 OrthoFinder output from all 47 species
Dcu_g08625 TFIIS TFIIs transcription elongation factor & original... 0.05 OrthoFinder output from all 47 species
MA_42714g0010 TFIIS Transcription elongation factor TFIIS OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
Smo437865 TFIIS Transcription elongation factor TFIIS OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006351 DNA-templated transcription IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
InterPro domains Description Start Stop
IPR001222 Znf_TFIIS 320 358
IPR017923 TFIIS_N 41 90
IPR003618 TFIIS_cen_dom 188 308
No external refs found!