1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00077p00030410

AMTR_s00077p00030410 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00077.14

Description : RNA biosynthesis.transcriptional activation.bHLH transcription factor


Gene families : OG0004823 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004823_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00077p00030410
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
AT1G29270 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.02 OrthoFinder output from all 47 species
AT3G56220 No alias transcription regulators 0.07 OrthoFinder output from all 47 species
Aev_g36751 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g23453 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08051 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene25705.t1 Aspi01Gene25705 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene25705.t2 Aspi01Gene25705 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25706.t1 Aspi01Gene25706 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene25706.t2 Aspi01Gene25706 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g08380 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g11944 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14512 No alias bHLH-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01020751001 No alias No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01021251001 No alias No description available 0.05 OrthoFinder output from all 47 species
GSVIVT01024605001 No alias No description available 0.04 OrthoFinder output from all 47 species
GSVIVT01030222001 No alias No description available 0.03 OrthoFinder output from all 47 species
LOC_Os03g21970.1 LOC_Os03g21970 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
LOC_Os07g47960.1 LOC_Os07g47960 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Pp3c25_5120V3.1 Pp3c25_5120 No annotation 0.02 OrthoFinder output from all 47 species
Solyc03g006040.3.1 Solyc03g006040 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc06g050840.3.1 Solyc06g050840 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc09g018500.3.1 Solyc09g018500 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Spa_g02758 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g47857 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g48775 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g32093 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0008152 metabolic process IEA Interproscan
MF GO:0016597 amino acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016849 phosphorus-oxygen lyase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0033897 ribonuclease T2 activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002912 ACT_dom 84 127
No external refs found!