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  5. AMTR_s00083p00043340

AMTR_s00083p00043340 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00083.14

Description : Chromatin organisation.histone modifications.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase


Gene families : OG_01_0000845 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000845_tree ,
OG_02_0001102 (LandPlants) Phylogenetic Tree(s): OG_02_0001102_tree ,
OG_03_0001942 (SeedPlants) Phylogenetic Tree(s): OG_03_0001942_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00083p00043340
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
Gb_12025 No alias class-I histone deacetylase. deacetylase component HDA19... 0.04 Archaeplastida
LOC_Os06g38470.1 No alias class-I histone deacetylase. deacetylase component HDA19... 0.02 Archaeplastida
Pp3c3_26550V3.1 No alias histone deacetylase 1 0.03 Archaeplastida
Solyc09g091440.3.1 No alias class-I histone deacetylase. deacetylase component HDA19... 0.03 Archaeplastida
Gb_07358 No alias class-I histone deacetylase. deacetylase component HDA19... 0.02 LandPlants
Gb_12025 No alias class-I histone deacetylase. deacetylase component HDA19... 0.03 LandPlants
Pp3c3_26550V3.1 No alias histone deacetylase 1 0.03 LandPlants
Gb_07358 No alias class-I histone deacetylase. deacetylase component HDA19... 0.02 SeedPlants
Gb_12025 No alias class-I histone deacetylase. deacetylase component HDA19... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR023801 His_deacetylse_dom 34 327
No external refs found!