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  5. AMTR_s00074p00109750

AMTR_s00074p00109750 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00074.32

Description : RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor


Gene families : OG0000297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000297_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00074p00109750
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
Aev_g02437 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene56524.t1 Aspi01Gene56524 regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene65607.t1 ZFN1, Aspi01Gene65607 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0013.g013277 ZFN1 regulatory protein of RNA homeostasis & original... 0.05 OrthoFinder output from all 47 species
Azfi_s0062.g035163 ZFN3 regulatory protein of RNA homeostasis & original... 0.05 OrthoFinder output from all 47 species
Cba_g02676 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
MA_10435385g0010 No alias C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
Msp_g07071 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Nbi_g29158 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Pir_g59491 No alias regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Ppi_g03060 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Smo45667 ZFN1 RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
Spa_g08293 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004221 obsolete ubiquitin thiolesterase activity IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 103 127
IPR000571 Znf_CCCH 58 82
No external refs found!