AMTR_s00073p00061640 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00073.16

Description : RNA biosynthesis.transcriptional activation.C2C2 superfamily.BBX/CONSTANS transcription factor


Gene families : OG0001051 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001051_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00073p00061640

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00156240 CIA2,... RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
AT1G25440 No alias B-box type zinc finger protein with CCT domain 0.04 OrthoFinder output from all 47 species
AT1G49130 No alias B-box type zinc finger protein with CCT domain 0.04 OrthoFinder output from all 47 species
AT1G73870 No alias B-box type zinc finger protein with CCT domain 0.04 OrthoFinder output from all 47 species
AT4G25990 CIL CCT motif family protein 0.02 OrthoFinder output from all 47 species
AT5G14370 No alias CCT motif family protein 0.02 OrthoFinder output from all 47 species
Adi_g021795 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g100906 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g105671 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g21583 No alias CMF transcription factor & original description: none 0.09 OrthoFinder output from all 47 species
Aev_g24424 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g09487 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g17463 No alias BBX class-III transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Als_g31393 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g01431 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g04399 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g13738 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g30657 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09765 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0055.g034007 No alias CMF transcription factor & original description: CDS=693-2417 0.03 OrthoFinder output from all 47 species
Azfi_s0172.g055744 No alias not classified & original description: CDS=1-1599 0.04 OrthoFinder output from all 47 species
Cba_g13442 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.08G070500.1 Ceric.08G070500 BBX class-III transcription factor & original... 0.01 OrthoFinder output from all 47 species
Ceric.12G022400.1 Ceric.12G022400 CMF transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g09127 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g12836 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g20875 No alias CMF transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g23913 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ehy_g06850 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g07785 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08483 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011897001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
LOC_Os02g49880.1 LOC_Os02g49880 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
LOC_Os03g50310.1 LOC_Os03g50310 transcription factor (BBX-CO) 0.11 OrthoFinder output from all 47 species
LOC_Os06g15330.1 LOC_Os06g15330 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Len_g23704 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g06124 No alias CMF transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g06152 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
MA_470965g0010 No alias transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
MA_91504g0010 No alias transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Msp_g37830 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g47217 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g14113 No alias BBX class-III transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g16447 No alias CMF transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Ore_g18512 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g14853 No alias CMF transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g19039 No alias BBX class-III transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g12347 No alias CMF transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g13174 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g60427 No alias BBX class-III transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007602 No alias not classified & original description: CDS=193-1710 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0152.g023452 No alias BBX class-III transcription factor & original... 0.04 OrthoFinder output from all 47 species
Sam_g15685 No alias CMF transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g34850 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Smo141010 COL3, ATCOL3 RNA biosynthesis.transcriptional activation.C2C2... 0.02 OrthoFinder output from all 47 species
Smo438000 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.03 OrthoFinder output from all 47 species
Solyc03g119540.3.1 Solyc03g119540 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Solyc04g007210.3.1 Solyc04g007210 transcription factor (BBX-CO) 0.04 OrthoFinder output from all 47 species
Solyc07g008540.3.1 CIA2, Solyc07g008540 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Spa_g04603 No alias CMF transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g47451 No alias CMF transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g53897 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g20168 No alias BBX class-III transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
Zm00001e005433_P002 Zm00001e005433 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species
Zm00001e012194_P001 Zm00001e012194 transcription factor (BBX-CO) 0.06 OrthoFinder output from all 47 species
Zm00001e015732_P002 Zm00001e015732 transcription factor (BBX-CO) 0.05 OrthoFinder output from all 47 species
Zm00001e030952_P002 Zm00001e030952 transcription factor (BBX-CO) 0.03 OrthoFinder output from all 47 species
Zm00001e036760_P001 Zm00001e036760 transcription factor (BBX-CO) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004047 aminomethyltransferase activity IEP HCCA
MF GO:0004089 carbonate dehydratase activity IEP HCCA
BP GO:0006544 glycine metabolic process IEP HCCA
BP GO:0006546 glycine catabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009071 serine family amino acid catabolic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
MF GO:0019203 carbohydrate phosphatase activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
MF GO:0050308 sugar-phosphatase activity IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR000315 Znf_B-box 22 64
IPR010402 CCT_domain 338 381
No external refs found!