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  5. AMTR_s00071p00180350

AMTR_s00071p00180350 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00071.183

No description available


Gene families : OG0002532 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002532_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00071p00180350
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Adi_g048304 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene01766.t1 Aspi01Gene01766 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g016036 No alias not classified & original description: CDS=117-785 0.03 OrthoFinder output from all 47 species
Dac_g10126 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15824 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os07g37820.1 LOC_Os07g37820 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc03g006590.3.1 Solyc03g006590 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e010569_P001 Zm00001e010569 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Zm00001e019078_P001 Zm00001e019078 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e031716_P001 Zm00001e031716 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Zm00001e035272_P001 Zm00001e035272 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!