AMTR_s00070p00192400 (SHM7,...)

Aliases : SHM7, evm_27.TU.AmTr_v1.0_scaffold00070.125

Description : Amino acid metabolism.biosynthesis.serine family.glycine.serine hydroxymethyltransferase

Gene families : OG0000518 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000518_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00070p00192400

Target	Alias	Description	ECC score	Gene Family Method
Als_g06323	SHM7	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
Azfi_s0006.g010132	SHM7	EC_2.1 transferase transferring one-carbon group &...	0.01	OrthoFinder output from all 47 species
Cba_g07101	SHM4	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species
GSVIVT01008954001	SHM7	Amino acid metabolism.biosynthesis.serine...	0.03	OrthoFinder output from all 47 species
GSVIVT01022843001	SHM7	Amino acid metabolism.biosynthesis.serine...	0.04	OrthoFinder output from all 47 species
LOC_Os01g65410.1	SHM7, LOC_Os01g65410	serine hydroxymethyltransferase. serine hydroxymethyltransferase	0.02	OrthoFinder output from all 47 species
Tin_g02129	SHM7	EC_2.1 transferase transferring one-carbon group &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004372	glycine hydroxymethyltransferase activity	IEA	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006544	glycine metabolic process	IEA	Interproscan
BP	GO:0006563	L-serine metabolic process	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009069	serine family amino acid metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	HCCA
MF	GO:0004066	asparagine synthase (glutamine-hydrolyzing) activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006528	asparagine metabolic process	IEP	HCCA
BP	GO:0006529	asparagine biosynthetic process	IEP	HCCA
BP	GO:0006887	exocytosis	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
CC	GO:0016272	prefoldin complex	IEP	HCCA
MF	GO:0016884	carbon-nitrogen ligase activity, with glutamine as amido-N-donor	IEP	HCCA
BP	GO:0019725	cellular homeostasis	IEP	HCCA
BP	GO:0032940	secretion by cell	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0042592	homeostatic process	IEP	HCCA
BP	GO:0045454	cell redox homeostasis	IEP	HCCA
BP	GO:0046903	secretion	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
BP	GO:0140352	export from cell	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001085	Ser_HO-MeTrfase	142	545

External Links

No external refs found!