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  5. AMTR_s00069p00191130

AMTR_s00069p00191130 (PRH75,...)


Aliases : PRH75, evm_27.TU.AmTr_v1.0_scaffold00069.196

Description : DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica


Gene families : OG0000466 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000466_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00069p00191130

Target Alias Description ECC score Gene Family Method Actions
AT5G62190 PRH75 DEAD box RNA helicase (PRH75) 0.04 OrthoFinder output from all 47 species
Ala_g14982 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g01062 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g09620 PRH75 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g36237 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020734.25 PMH2, ATRH53 DEAD-box ATP-dependent RNA helicase 53, mitochondrial... 0.01 OrthoFinder output from all 47 species
Ehy_g15362 emb1138 group-II intron splicing RNA helicase *(PMH) & original... 0.02 OrthoFinder output from all 47 species
Ehy_g21458 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g10670 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g13893 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g13894 PRH75 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g30474 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g08414 emb1138 group-II intron splicing RNA helicase *(RH3) & original... 0.02 OrthoFinder output from all 47 species
Tin_g15128 PRH75 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e003219_P001 PMH2, ATRH53,... RNA helicase (PMH) 0.03 OrthoFinder output from all 47 species
Zm00001e018107_P001 PMH2, ATRH53,... RNA helicase (PMH) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005618 cell wall IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 161 338
IPR001650 Helicase_C 415 481
IPR012562 GUCT 571 667
No external refs found!