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  5. AMTR_s00069p00189250

AMTR_s00069p00189250 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00069.192

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL22 component


Gene families : OG0000996 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000996_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00069p00189250
Cluster HCCA: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
AT3G05560 No alias Ribosomal L22e protein family 0.13 OrthoFinder output from all 47 species
AT5G27770 No alias Ribosomal L22e protein family 0.14 OrthoFinder output from all 47 species
Adi_g012188 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g012189 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Adi_g062074 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Adi_g077282 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Adi_g124335 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aev_g03619 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g11886 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ala_g18322 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Als_g19592 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Als_g24279 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aob_g00408 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aob_g15050 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aop_g10541 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Aop_g22540 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Aop_g39612 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 47 species
Aspi01Gene38161.t1 Aspi01Gene38161 component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Azfi_s0003.g007793 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Azfi_s0005.g009357 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.07 OrthoFinder output from all 47 species
Cba_g21293 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ceric.08G045600.1 Ceric.08G045600 component *(eL22) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ceric.26G014800.1 Ceric.26G014800 component *(eL22) of large ribosomal-subunit (LSU)... 0.15 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001206.7 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
Cre07.g357850 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder output from all 47 species
Dac_g04863 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.1 OrthoFinder output from all 47 species
Dac_g14500 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dac_g27123 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Dcu_g18517 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
GSVIVT01028021001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.09 OrthoFinder output from all 47 species
GSVIVT01031130001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.11 OrthoFinder output from all 47 species
GSVIVT01031158001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder output from all 47 species
GSVIVT01035141001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.12 OrthoFinder output from all 47 species
Gb_08874 No alias component RPL22 of LSU proteome component 0.12 OrthoFinder output from all 47 species
Gb_36164 No alias component RPL22 of LSU proteome component 0.13 OrthoFinder output from all 47 species
LOC_Os03g22340.1 LOC_Os03g22340 component RPL22 of LSU proteome component 0.16 OrthoFinder output from all 47 species
LOC_Os07g47710.1 LOC_Os07g47710 component RPL22 of LSU proteome component 0.13 OrthoFinder output from all 47 species
Len_g02014 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Lfl_g31513 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
MA_130453g0010 No alias component RPL22 of LSU proteome component 0.08 OrthoFinder output from all 47 species
Mp4g02920.1 No alias component RPL22 of LSU proteome component 0.13 OrthoFinder output from all 47 species
Msp_g03306 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.08 OrthoFinder output from all 47 species
Msp_g20028 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Ore_g36770 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g03911 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pir_g29051 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Pir_g40025 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Pp3c11_630V3.1 Pp3c11_630 Ribosomal L22e protein family 0.06 OrthoFinder output from all 47 species
Pp3c1_120V3.1 Pp3c1_120 Ribosomal L22e protein family 0.09 OrthoFinder output from all 47 species
Pp3c2_28500V3.1 Pp3c2_28500 Ribosomal L22e protein family 0.08 OrthoFinder output from all 47 species
Pp3c2_28510V3.1 Pp3c2_28510 Ribosomal L22e protein family 0.08 OrthoFinder output from all 47 species
Pp3c7_27030V3.1 Pp3c7_27030 Ribosomal L22e protein family 0.05 OrthoFinder output from all 47 species
Ppi_g23306 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g23657 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Ppi_g24808 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Ppi_g38125 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0197.g025519 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.06 OrthoFinder output from all 47 species
Sam_g13724 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Sam_g30822 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g32149 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g32393 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g41282 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g46506 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Sam_g47525 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Smo270704 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Solyc01g099830.3.1 Solyc01g099830 component RPL22 of LSU proteome component 0.14 OrthoFinder output from all 47 species
Solyc09g075150.3.1 Solyc09g075150 component RPL22 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Solyc09g075155.1.1 Solyc09g075155 component RPL22 of LSU proteome component 0.09 OrthoFinder output from all 47 species
Spa_g22846 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.11 OrthoFinder output from all 47 species
Spa_g25050 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.04 OrthoFinder output from all 47 species
Spa_g33994 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Spa_g42689 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Tin_g11406 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Tin_g36488 No alias component *(eL22) of large ribosomal-subunit (LSU)... 0.09 OrthoFinder output from all 47 species
Zm00001e010958_P001 Zm00001e010958 component RPL22 of LSU proteome component 0.06 OrthoFinder output from all 47 species
Zm00001e035835_P001 Zm00001e035835 component RPL22 of LSU proteome component 0.15 OrthoFinder output from all 47 species
Zm00001e038221_P001 Zm00001e038221 component RPL22 of LSU proteome component 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005622 intracellular anatomical structure IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP HCCA
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005787 signal peptidase complex IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP HCCA
MF GO:0015453 oxidoreduction-driven active transmembrane transporter activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR002671 Ribosomal_L22e 12 123
No external refs found!