AMTR_s00068p00145200 (ATRABA2A, ATRAB11C,...)

Aliases : ATRABA2A, ATRAB11C, ATRAB-A2A, RAB-A2A, RAB11c, evm_27.TU.AmTr_v1.0_scaffold00068.101

Description : Vesicle trafficking.regulation of membrane tethering and fusion.RAB-GTPase activities.A-class RAB GTPase

Gene families : OG0000247 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000247_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00068p00145200

Target	Alias	Description	ECC score	Gene Family Method
Aev_g04605	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g00731	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g03446	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g01569	AtRABA5a, RABA5a	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g01612	RABA2b,...	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g42193	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s2632.g112466	ATRABA2A,...	A-class RAB GTPase & original description: CDS=274-942	0.03	OrthoFinder output from all 47 species
Ceric.20G067000.1	AtRABA1f,...	A-class RAB GTPase & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.27G012200.1	ATRABA2A,...	A-class RAB GTPase & original description:...	0.03	OrthoFinder output from all 47 species
Cre03.g189250	ATRABA2A,...	Vesicle trafficking.regulation of membrane tethering and...	0.02	OrthoFinder output from all 47 species
Dcu_g40522	ATRABA2A,...	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os09g15790.1	AtRABA1f,...	A-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Len_g16053	ATRABA5C, ARA4,...	A-class RAB GTPase & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g05986	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g18286	AtRABA5d, RABA5d	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g03300	AtRABA1f, RABA1f	A-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g103380.4.1	ATRABA2A,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Solyc03g118820.4.1	RABA6a,...	A-class RAB GTPase	0.03	OrthoFinder output from all 47 species
Solyc12g010790.2.1	AtRABA1f,...	A-class RAB GTPase	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0007264	small GTPase mediated signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
BP	GO:0035556	intracellular signal transduction	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	14	174

External Links

No external refs found!

AMTR_s00068p00145200 (ATRABA2A, ATRAB11C,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation