AMTR_s00068p00082940 (NCBP,...)

Aliases : NCBP, evm_27.TU.AmTr_v1.0_scaffold00068.38

Description : Protein biosynthesis.translation initiation.mRNA loading.4EHP RNA-cap-binding factor

Gene families : OG0007108 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007108_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00068p00082940

Target	Alias	Description	ECC score	Gene Family Method
AT5G18110	NCBP	novel cap-binding protein	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000241.158	NCBP	Eukaryotic translation initiation factor NCBP OS=Oryza...	0.02	OrthoFinder output from all 47 species
GSVIVT01033412001	NCBP	Protein biosynthesis.translation initiation.mRNA...	0.06	OrthoFinder output from all 47 species
Ore_g28797	NCBP	RNA-cap-binding factor (4EHP) & original description: none	0.02	OrthoFinder output from all 47 species
Smo419389	NCBP	Protein biosynthesis.translation initiation.mRNA...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003743	translation initiation factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006413	translational initiation	IEA	Interproscan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004334	fumarylacetoacetase activity	IEP	HCCA
MF	GO:0004779	sulfate adenylyltransferase activity	IEP	HCCA
MF	GO:0004781	sulfate adenylyltransferase (ATP) activity	IEP	HCCA
BP	GO:0007264	small GTPase mediated signal transduction	IEP	HCCA
BP	GO:0008037	cell recognition	IEP	HCCA
BP	GO:0009072	aromatic amino acid metabolic process	IEP	HCCA
MF	GO:0016822	hydrolase activity, acting on acid carbon-carbon bonds	IEP	HCCA
MF	GO:0016823	hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances	IEP	HCCA
BP	GO:0048544	recognition of pollen	IEP	HCCA
MF	GO:0070566	adenylyltransferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001040	TIF_eIF_4E	50	211

External Links

No external refs found!