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  5. AMTR_s00068p00077860

AMTR_s00068p00077860 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00068.35

Description : Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0013171 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0013171_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00068p00077860

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00078600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g62930,... 0.05 OrthoFinder output from all 47 species
AMTR_s00074p00172480 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g62670,... 0.04 OrthoFinder output from all 47 species
AT4G28010 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 OrthoFinder output from all 47 species
Solyc07g064625.1.1 Solyc07g064625 Pentatricopeptide repeat-containing protein At4g28010... 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 495 543
IPR002885 Pentatricopeptide_repeat 239 287
IPR002885 Pentatricopeptide_repeat 133 182
IPR002885 Pentatricopeptide_repeat 424 473
IPR002885 Pentatricopeptide_repeat 69 112
IPR002885 Pentatricopeptide_repeat 565 612
IPR002885 Pentatricopeptide_repeat 386 417
IPR002885 Pentatricopeptide_repeat 199 231
IPR002885 Pentatricopeptide_repeat 304 333
No external refs found!