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Aliases : PTAC5, evm_27.TU.AmTr_v1.0_scaffold00067.91
Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.regulatory co-factors.TAC5 component
Gene families : OG0007664 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007664_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00067p00113950 | |
| Cluster | HCCA: Cluster_101 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Ala_g20546 | PTAC5 | cofactor of plastid-encoded RNA polymerase *(TAC5) &... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g11480 | PTAC5 | cofactor of plastid-encoded RNA polymerase *(TAC5) &... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s1467.g103476 | PTAC5 | cofactor of plastid-encoded RNA polymerase *(TAC5) &... | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g24577 | PTAC5 | cofactor of plastid-encoded RNA polymerase *(TAC5) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ehy_g12076 | PTAC5 | cofactor of plastid-encoded RNA polymerase *(TAC5) &... | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os04g43420.1 | PTAC5, LOC_Os04g43420 | TAC5 cofactor of plastid-encoded RNA polymerase | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g15814 | PTAC5 | cofactor of plastid-encoded RNA polymerase *(TAC5) &... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g38958 | PTAC5 | cofactor of plastid-encoded RNA polymerase *(TAC5) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g08855 | PTAC5 | cofactor of plastid-encoded RNA polymerase *(TAC5) &... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g60750 | PTAC5 | cofactor of plastid-encoded RNA polymerase *(TAC5) &... | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g42606 | PTAC5 | cofactor of plastid-encoded RNA polymerase *(TAC5) &... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g51898 | No alias | cofactor of plastid-encoded RNA polymerase *(TAC5) &... | 0.02 | OrthoFinder output from all 47 species | |
| Smo404832 | PTAC5 | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc09g091830.4.1 | PTAC5, Solyc09g091830 | TAC5 cofactor of plastid-encoded RNA polymerase | 0.05 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006801 | superoxide metabolic process | IEP | HCCA |
| BP | GO:0006855 | xenobiotic transmembrane transport | IEP | HCCA |
| MF | GO:0015291 | secondary active transmembrane transporter activity | IEP | HCCA |
| MF | GO:0015297 | antiporter activity | IEP | HCCA |
| MF | GO:0030246 | carbohydrate binding | IEP | HCCA |
| BP | GO:0033013 | tetrapyrrole metabolic process | IEP | HCCA |
| BP | GO:0033014 | tetrapyrrole biosynthetic process | IEP | HCCA |
| BP | GO:0042908 | xenobiotic transport | IEP | HCCA |
| BP | GO:0072593 | reactive oxygen species metabolic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002477 | Peptidoglycan-bd-like | 200 | 258 |
| No external refs found! |