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  5. AMTR_s00067p00052610

AMTR_s00067p00052610 (LSH6,...)


Aliases : LSH6, evm_27.TU.AmTr_v1.0_scaffold00067.31

Description : Protein G1-like2 OS=Oryza sativa subsp. japonica


Gene families : OG0001118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00067p00052610
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AT1G07090 LSH6 Protein of unknown function (DUF640) 0.04 OrthoFinder output from all 47 species
AT1G78815 LSH7 Protein of unknown function (DUF640) 0.03 OrthoFinder output from all 47 species
AT2G31160 LSH3 Protein of unknown function (DUF640) 0.06 OrthoFinder output from all 47 species
AT2G42610 LSH10 Protein of unknown function (DUF640) 0.03 OrthoFinder output from all 47 species
AT3G04510 LSH2 Protein of unknown function (DUF640) 0.03 OrthoFinder output from all 47 species
AT3G23290 LSH4 No description available 0.03 OrthoFinder output from all 47 species
AT4G18610 LSH9 Protein of unknown function (DUF640) 0.05 OrthoFinder output from all 47 species
AT5G28490 LSH1 Protein of unknown function (DUF640) 0.03 OrthoFinder output from all 47 species
AT5G58500 LSH5 Protein of unknown function (DUF640) 0.04 OrthoFinder output from all 47 species
Aop_g37612 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0093.g043261 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.22G071900.1 LSH6, Ceric.22G071900 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Ceric.29G008000.1 LSH4, Ceric.29G008000 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01020708001 LSH10 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.05 OrthoFinder output from all 47 species
GSVIVT01021215001 LSH10 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.05 OrthoFinder output from all 47 species
GSVIVT01023521001 No alias Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4... 0.05 OrthoFinder output from all 47 species
GSVIVT01027827001 LSH10 No description available 0.03 OrthoFinder output from all 47 species
Gb_15426 LSH4 Protein G1-like5 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Gb_36840 LSH4 Protein G1-like6 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species
Gb_39186 No alias Protein G1-like6 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species
MA_12926g0010 LSH4 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.03 OrthoFinder output from all 47 species
Pnu_g12268 LSH6 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0158.g023794 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Smo36560 No alias Protein G1-like4 OS=Oryza sativa subsp. indica 0.02 OrthoFinder output from all 47 species
Solyc05g055020.4.1 LSH1, Solyc05g055020 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1... 0.03 OrthoFinder output from all 47 species
Solyc10g007310.1.1 LSH10, Solyc10g007310 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.03 OrthoFinder output from all 47 species
Solyc10g008000.1.1 LSH10, Solyc10g008000 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10... 0.07 OrthoFinder output from all 47 species
Spa_g04648 LSH4 plant-specific ALOG-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Spa_g22416 LSH4 plant-specific ALOG-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Zm00001e004570_P001 LSH4, Zm00001e004570 Protein G1-like4 OS=Oryza sativa subsp. indica... 0.05 OrthoFinder output from all 47 species
Zm00001e012687_P001 LSH4, Zm00001e012687 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3... 0.04 OrthoFinder output from all 47 species
Zm00001e019403_P001 LSH6, Zm00001e019403 Protein G1-like7 OS=Oryza sativa subsp. indica... 0.06 OrthoFinder output from all 47 species
Zm00001e027222_P001 LSH6, Zm00001e027222 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.09 OrthoFinder output from all 47 species
Zm00001e031512_P001 LSH6, Zm00001e031512 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5... 0.03 OrthoFinder output from all 47 species
Zm00001e037775_P001 LSH4, Zm00001e037775 Protein G1-like2 OS=Oryza sativa subsp. indica... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008146 sulfotransferase activity IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0008762 UDP-N-acetylmuramate dehydrogenase activity IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0009690 cytokinin metabolic process IEP HCCA
BP GO:0010817 regulation of hormone levels IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0019139 cytokinin dehydrogenase activity IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
BP GO:0042445 hormone metabolic process IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
BP GO:0045454 cell redox homeostasis IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
InterPro domains Description Start Stop
IPR006936 ALOG_dom 23 149
No external refs found!