AMTR_s00066p00184560 (ATPRFB, HCF109,...)

Aliases : ATPRFB, HCF109, evm_27.TU.AmTr_v1.0_scaffold00066.232

Description : Protein biosynthesis.organelle translation machineries.translation termination.PrfB-type peptide chain release factor

Gene families : OG0002101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002101_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00066p00184560

Target	Alias	Description	ECC score	Gene Family Method
AT3G57190	No alias	peptide chain release factor, putative	0.03	OrthoFinder output from all 47 species
AT5G36170	ATPRFB, HCF109	high chlorophyll fluorescent 109	0.06	OrthoFinder output from all 47 species
Adi_g040965	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.03	OrthoFinder output from all 47 species
Ala_g01893	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.02	OrthoFinder output from all 47 species
Aob_g08393	No alias	translation peptide chain release factor *(PrfB) &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene23943.t1	ATPRFB, HCF109,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0252.g060375	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.03	OrthoFinder output from all 47 species
Cba_g23243	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.03	OrthoFinder output from all 47 species
Ceric.36G013000.1	ATPRFB, HCF109,...	translation peptide chain release factor *(PrfB) &...	0.04	OrthoFinder output from all 47 species
Cre01.g010864	ATPRFB, HCF109	Protein biosynthesis.organelle translation...	0.07	OrthoFinder output from all 47 species
Dcu_g09191	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.07	OrthoFinder output from all 47 species
Ehy_g09038	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.03	OrthoFinder output from all 47 species
GSVIVT01033556001	No alias	Protein biosynthesis.organelle translation...	0.03	OrthoFinder output from all 47 species
Gb_27626	ATPRFB, HCF109	PrfB-type translation peptide chain release factor	0.01	OrthoFinder output from all 47 species
Len_g16720	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.03	OrthoFinder output from all 47 species
Lfl_g12599	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.04	OrthoFinder output from all 47 species
MA_10437191g0010	ATPRFB, HCF109	PrfB-type translation peptide chain release factor	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002336	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.03	OrthoFinder output from all 47 species
Sam_g51819	No alias	translation peptide chain release factor *(PrfB) &...	0.05	OrthoFinder output from all 47 species
Smo430253	ATPRFB, HCF109	Protein biosynthesis.organelle translation...	0.02	OrthoFinder output from all 47 species
Solyc04g025290.4.1	ATPRFB, HCF109,...	PrfB-type translation peptide chain release factor	0.09	OrthoFinder output from all 47 species
Spa_g09555	ATPRFB, HCF109	translation peptide chain release factor *(PrfB) &...	0.05	OrthoFinder output from all 47 species
Zm00001e031540_P002	Zm00001e031540	PrfB-type translation peptide chain release factor	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003747	translation release factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	Interproscan
BP	GO:0006415	translational termination	IEA	Interproscan
MF	GO:0008079	translation termination factor activity	None	Extended
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016149	translation release factor activity, codon specific	IEA	Interproscan
BP	GO:0022411	cellular component disassembly	None	Extended
BP	GO:0032984	protein-containing complex disassembly	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0005525	GTP binding	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006766	vitamin metabolic process	IEP	HCCA
BP	GO:0006767	water-soluble vitamin metabolic process	IEP	HCCA
BP	GO:0006772	thiamine metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0009110	vitamin biosynthetic process	IEP	HCCA
BP	GO:0009228	thiamine biosynthetic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
MF	GO:0019001	guanyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032561	guanyl ribonucleotide binding	IEP	HCCA
BP	GO:0034308	primary alcohol metabolic process	IEP	HCCA
BP	GO:0034309	primary alcohol biosynthetic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0042364	water-soluble vitamin biosynthetic process	IEP	HCCA
BP	GO:0042723	thiamine-containing compound metabolic process	IEP	HCCA
BP	GO:0042724	thiamine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000352	Pep_chain_release_fac_I	314	423
IPR005139	PCRF	171	279

External Links

No external refs found!

AMTR_s00066p00184560 (ATPRFB, HCF109,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation