AMTR_s00065p00179810 (CLPB4, CLPB-M,...)

Aliases : CLPB4, CLPB-M, HSP98.7, evm_27.TU.AmTr_v1.0_scaffold00065.151

Description : External stimuli response.temperature.Hsp (heat-shock-responsive protein) families.Hsp100 protein

Gene families : OG0000193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000193_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00065p00179810
Cluster	HCCA: Cluster_30

Target	Alias	Description	ECC score	Gene Family Method
AT5G15450	CLPB3, CLPB-P, APG6	casein lytic proteinase B3	0.02	OrthoFinder output from all 47 species
AT5G50920	HSP93-V, DCA1,...	CLPC homologue 1	0.04	OrthoFinder output from all 47 species
Adi_g001206	ATHSP101, HOT1, HSP101	cytosolic chaperone *(Hsp101) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g28850	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.02	OrthoFinder output from all 47 species
Als_g15718	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g16086	HSP93-V, DCA1,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g47842	HSP93-V, DCA1,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g11290	ATHSP101, HOT1, HSP101	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g21747	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g13437	ATHSP101, HOT1, HSP101	cytosolic chaperone *(Hsp101) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene10809.t1	SAG15, CLPD,...	chaperone component *(ClpD) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Cba_g20352	HSP93-V, DCA1,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.02G041000.1	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Ceric.18G061200.1	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Cre11.g467575	CLPB3, CLPB-P, APG6	External stimuli response.temperature.Hsp...	0.01	OrthoFinder output from all 47 species
Dac_g01014	ATHSP101, HOT1, HSP101	cytosolic chaperone *(Hsp101) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g13807	ATHSP101, HOT1, HSP101	cytosolic chaperone *(Hsp101) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g20889	CLPB3, CLPB-P, APG6	EC_3.2 glycosylase & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g09479	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g17103	SAG15, CLPD, ERD1	chaperone component *(ClpD) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Ehy_g29771	ATHSP101, HOT1, HSP101	cytosolic chaperone *(Hsp101) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01007880001	ATHSP101, HOT1, HSP101	External stimuli response.temperature.Hsp...	0.03	OrthoFinder output from all 47 species
GSVIVT01011496001	CLPB3, CLPB-P, APG6	External stimuli response.temperature.Hsp...	0.03	OrthoFinder output from all 47 species
LOC_Os02g08490.1	CLPB4, CLPB-M,...	organellar chaperone (Clp-p\|Clp-m)	0.03	OrthoFinder output from all 47 species
LOC_Os03g31300.1	CLPB3, CLPB-P,...	organellar chaperone (Clp-p\|Clp-m)	0.03	OrthoFinder output from all 47 species
LOC_Os05g44340.1	ATHSP101, HOT1,...	cytosolic chaperone (Hsp101)	0.03	OrthoFinder output from all 47 species
Len_g32317	CLPB3, CLPB-P, APG6	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g34142	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.02	OrthoFinder output from all 47 species
MA_1160713g0010	HSP93-V, DCA1,...	ATP-dependent Clp protease ATP-binding subunit ClpA...	0.04	OrthoFinder output from all 47 species
MA_178786g0010	CLPB3, CLPB-P, APG6	Chaperone protein ClpB2, chloroplastic OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
MA_596288g0010	HSP93-V, DCA1,...	Chaperone protein ClpC1, chloroplastic OS=Oryza sativa...	0.04	OrthoFinder output from all 47 species
MA_8117g0010	HSP93-V, DCA1,...	ATP-dependent Clp protease ATP-binding subunit ClpA...	0.05	OrthoFinder output from all 47 species
Msp_g23938	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Nbi_g10414	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Nbi_g12640	ATHSP101, HOT1, HSP101	cytosolic chaperone *(Hsp101) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g11817	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Pir_g19845	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Pnu_g10514	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Ppi_g10767	ATHSP101, HOT1, HSP101	cytosolic chaperone *(Hsp101) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g33706	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g13530	No alias	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g19448	No alias	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.02	OrthoFinder output from all 47 species
Smo411118	CLPB3, CLPB-P, APG6	External stimuli response.temperature.Hsp...	0.03	OrthoFinder output from all 47 species
Spa_g18708	CLPB3, CLPB-P, APG6	organellar chaperone *(Clp-p/Clp-m) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g19032	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Spa_g38742	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.02	OrthoFinder output from all 47 species
Spa_g40577	HSP93-V, DCA1,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g46726	ATHSP101, HOT1, HSP101	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g47608	HSP93-V, DCA1,...	chaperone component *(ClpC) of chloroplast Clp-type...	0.03	OrthoFinder output from all 47 species
Zm00001e002026_P002	CLPB3, CLPB-P,...	organellar chaperone (Clp-p\|Clp-m)	0.02	OrthoFinder output from all 47 species
Zm00001e008312_P001	HSP93-V, DCA1,...	chaperone component ClpC of chloroplast Clp-type protease complex	0.02	OrthoFinder output from all 47 species
Zm00001e039805_P002	HSP93-V, DCA1,...	chaperone component ClpC of chloroplast Clp-type protease complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	IEA	Interproscan
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005984	disaccharide metabolic process	IEP	HCCA
BP	GO:0005991	trehalose metabolic process	IEP	HCCA
BP	GO:0005992	trehalose biosynthetic process	IEP	HCCA
BP	GO:0009311	oligosaccharide metabolic process	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0046351	disaccharide biosynthetic process	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003959	ATPase_AAA_core	300	416
IPR004176	Clp_R_dom	190	241
IPR004176	Clp_R_dom	113	164
IPR019489	Clp_ATPase_C	872	951

External Links

No external refs found!

AMTR_s00065p00179810 (CLPB4, CLPB-M,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation