AMTR_s00065p00092420 (GRF1, AtGRF1,...)

Aliases : GRF1, AtGRF1, evm_27.TU.AmTr_v1.0_scaffold00065.51

Description : RNA biosynthesis.transcriptional activation.GRF-GIF transcriptional complex.GRF transcription factor component

Gene families : OG0000528 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000528_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00065p00092420

Target	Alias	Description	ECC score	Gene Family Method
AT2G06200	GRF6, AtGRF6	growth-regulating factor 6	0.04	OrthoFinder output from all 47 species
AT2G22840	GRF1, AtGRF1	growth-regulating factor 1	0.05	OrthoFinder output from all 47 species
AT2G36400	GRF3, AtGRF3	growth-regulating factor 3	0.07	OrthoFinder output from all 47 species
AT3G13960	GRF5, AtGRF5	growth-regulating factor 5	0.06	OrthoFinder output from all 47 species
AT3G52910	GRF4, AtGRF4	growth-regulating factor 4	0.07	OrthoFinder output from all 47 species
Adi_g014148	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Adi_g059082	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g38831	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Aev_g39822	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Ala_g26167	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.06	OrthoFinder output from all 47 species
Als_g13520	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Als_g16124	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Aob_g14316	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Aob_g27286	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Aspi01Gene35340.t1	GRF1, AtGRF1,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.05	OrthoFinder output from all 47 species
Aspi01Gene38017.t1	GRF1, AtGRF1,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Aspi01Gene72796.t2	GRF2, AtGRF2,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Azfi_s0032.g024577	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Azfi_s0097.g043820	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.05	OrthoFinder output from all 47 species
Azfi_s0256.g060519	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Cba_g05462	GRF2, AtGRF2	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g07600	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Cba_g09120	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Cba_g11628	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.05	OrthoFinder output from all 47 species
Cba_g12857	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Cba_g15543	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Ceric.15G046200.1	GRF1, AtGRF1,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.05	OrthoFinder output from all 47 species
Ceric.36G051200.1	GRF5, AtGRF5,...	component *(GRF) of GRF-GIF transcriptional complex &...	0.05	OrthoFinder output from all 47 species
Dac_g14130	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Dac_g23460	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Dcu_g14903	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Dcu_g16923	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.06	OrthoFinder output from all 47 species
Dcu_g19232	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Dcu_g49605	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g38973	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.06	OrthoFinder output from all 47 species
Dde_g47336	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
GSVIVT01009299001	GRF1, AtGRF1	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.08	OrthoFinder output from all 47 species
GSVIVT01015095001	GRF5, AtGRF5	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.04	OrthoFinder output from all 47 species
GSVIVT01016762001	GRF5, AtGRF5	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.05	OrthoFinder output from all 47 species
GSVIVT01019913001	GRF3, AtGRF3	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.05	OrthoFinder output from all 47 species
GSVIVT01024326001	GRF5, AtGRF5	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.08	OrthoFinder output from all 47 species
GSVIVT01038629001	AtGRF7, GRF7	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.06	OrthoFinder output from all 47 species
Gb_20400	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.02	OrthoFinder output from all 47 species
Gb_20443	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
LOC_Os02g45570.1	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.05	OrthoFinder output from all 47 species
LOC_Os02g47280.1	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
LOC_Os03g51970.1	GRF1, AtGRF1,...	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
LOC_Os04g48510.1	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
LOC_Os12g29980.1	GRF2, AtGRF2,...	component GRF of GRF-GIF transcriptional complex	0.08	OrthoFinder output from all 47 species
Len_g10947	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Len_g36054	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.05	OrthoFinder output from all 47 species
Len_g36239	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
MA_111469g0010	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
MA_137877g0010	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
MA_18836g0010	GRF5, AtGRF5	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
MA_33661g0010	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
MA_88101g0010	GRF1, AtGRF1	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Mp8g16900.1	GRF2, AtGRF2	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Nbi_g07300	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Nbi_g38721	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.05	OrthoFinder output from all 47 species
Ore_g20696	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Pnu_g32639	GRF2, AtGRF2	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g06956	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Ppi_g30072	GRF3, AtGRF3	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g63627	GRF1, AtGRF1	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000754	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002301	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0035.g011382	No alias	not classified & original description: CDS=103-1059	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0095.g019225	No alias	not classified & original description: CDS=695-3535	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0120.g021398	GRF4, AtGRF4	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0161.g023900	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.04	OrthoFinder output from all 47 species
Sam_g33833	No alias	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Smo412762	GRF2, AtGRF2	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.02	OrthoFinder output from all 47 species
Smo442384	GRF5, AtGRF5	RNA biosynthesis.transcriptional activation.GRF-GIF...	0.03	OrthoFinder output from all 47 species
Solyc01g091540.3.1	GRF9, AtGRF9,...	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
Solyc03g082430.1.1	AtGRF7, GRF7,...	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
Solyc07g041640.3.1	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Solyc08g005430.3.1	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Solyc10g083510.2.1	GRF3, AtGRF3,...	component GRF of GRF-GIF transcriptional complex	0.07	OrthoFinder output from all 47 species
Solyc12g096070.2.1	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.03	OrthoFinder output from all 47 species
Spa_g12480	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g33786	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Spa_g48274	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.03	OrthoFinder output from all 47 species
Tin_g11764	GRF5, AtGRF5	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Tin_g32090	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g45753	GRF2, AtGRF2	component *(GRF) of GRF-GIF transcriptional complex &...	0.02	OrthoFinder output from all 47 species
Zm00001e011207_P003	GRF1, AtGRF1,...	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
Zm00001e015561_P002	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species
Zm00001e041573_P002	GRF5, AtGRF5,...	component GRF of GRF-GIF transcriptional complex	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006486	protein glycosylation	IEP	HCCA
MF	GO:0008378	galactosyltransferase activity	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR014978	Gln-Leu-Gln_QLQ	173	208
IPR014977	WRC_dom	243	286

External Links

No external refs found!

AMTR_s00065p00092420 (GRF1, AtGRF1,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation