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  5. AMTR_s00065p00054150

AMTR_s00065p00054150 (ATCSLC12, CSLC12,...)


Aliases : ATCSLC12, CSLC12, evm_27.TU.AmTr_v1.0_scaffold00065.27

Description : Cell wall.hemicellulose.xyloglucan.synthesis.CSLC-type 1,4-beta-glucan synthase


Gene families : OG0000269 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000269_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00065p00054150

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0113.g045999 ATCSLC05,... EC_2.4 glycosyltransferase & original description: CDS=1-2085 0.04 OrthoFinder output from all 47 species
Dcu_g07663 ATCSLC05,... EC_2.4 glycosyltransferase & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g07706 ATCSLC05,... EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g06139 ATCSLC05,... EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01009290001 ATCSLC12, CSLC12 Cell wall.hemicellulose.xyloglucan.synthesis.CSLC-type... 0.03 OrthoFinder output from all 47 species
Gb_05418 ATCSLC8, ATCSLC08, CSLC08 1,4-beta-glucan synthase (CSLC) 0.02 OrthoFinder output from all 47 species
LOC_Os08g33740.1 ATCSLA9, RAT4,... mannan synthase (CSLA) 0.04 OrthoFinder output from all 47 species
Pnu_g23566 ATCSLC05,... EC_2.4 glycosyltransferase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0001.g000032 ATCSLA9, RAT4,... EC_2.4 glycosyltransferase & original description: CDS=377-2032 0.02 OrthoFinder output from all 47 species
Smo140200 ATCSLC05,... Cell wall.hemicellulose.xyloglucan.synthesis.CSLC-type... 0.03 OrthoFinder output from all 47 species
Smo230176 ATCSLA9, RAT4,... Cell wall.hemicellulose.heteromannan.synthesis.mannan... 0.02 OrthoFinder output from all 47 species
Solyc02g089640.3.1 ATCSLC04,... 1,4-beta-glucan synthase (CSLC) 0.02 OrthoFinder output from all 47 species
Solyc04g077470.3.1 ATCSLC12,... 1,4-beta-glucan synthase (CSLC) 0.04 OrthoFinder output from all 47 species
Solyc10g083670.3.1 ATCSLA9, RAT4,... mannan synthase (CSLA) 0.03 OrthoFinder output from all 47 species
Solyc11g066820.2.1 CSLA02, ATCSLA2,... mannan synthase (CSLA) 0.02 OrthoFinder output from all 47 species
Zm00001e025054_P003 CSLA02, ATCSLA2,... mannan synthase (CSLA) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!