AMTR_s00065p00022170 (PDE319, SCA3,...)

Aliases : PDE319, SCA3, evm_27.TU.AmTr_v1.0_scaffold00065.7

Description : RNA biosynthesis.organelle machineries.RNA polymerase activities.nuclear-encoded organellar RNA polymerase (NEP)

Gene families : OG0002420 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002420_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00065p00022170

Target	Alias	Description	ECC score	Gene Family Method
AT2G24120	PDE319, SCA3	DNA/RNA polymerases superfamily protein	0.05	OrthoFinder output from all 47 species
AT5G15700	No alias	DNA/RNA polymerases superfamily protein	0.03	OrthoFinder output from all 47 species
Dac_g06640	No alias	nuclear-encoded organellar RNA polymerase *(NEP) &...	0.02	OrthoFinder output from all 47 species
Ehy_g14002	No alias	nuclear-encoded organellar RNA polymerase *(NEP) &...	0.02	OrthoFinder output from all 47 species
GSVIVT01023660001	PDE319, SCA3	RNA biosynthesis.organelle machineries.RNA polymerase...	0.06	OrthoFinder output from all 47 species
Gb_02899	MGP3	nuclear-encoded organellar RNA polymerase (NEP)	0.04	OrthoFinder output from all 47 species
LOC_Os06g44230.1	PDE319, SCA3,...	nuclear-encoded organellar RNA polymerase (NEP)	0.04	OrthoFinder output from all 47 species
LOC_Os09g07120.1	LOC_Os09g07120	nuclear-encoded organellar RNA polymerase (NEP)	0.03	OrthoFinder output from all 47 species
Ore_g43034	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g26719	No alias	nuclear-encoded organellar RNA polymerase *(NEP) &...	0.03	OrthoFinder output from all 47 species
Zm00001e035572_P001	MGP3, Zm00001e035572	nuclear-encoded organellar RNA polymerase (NEP)	0.03	OrthoFinder output from all 47 species
Zm00001e037650_P001	PDE319, SCA3,...	nuclear-encoded organellar RNA polymerase (NEP)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
MF	GO:0004645	1,4-alpha-oligoglucan phosphorylase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
MF	GO:0008184	glycogen phosphorylase activity	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002092	DNA-dir_Rpol_phage-type	596	987

External Links

No external refs found!

AMTR_s00065p00022170 (PDE319, SCA3,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation