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Aliases : evm_27.TU.AmTr_v1.0_scaffold00065.6
Description : Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana
Gene families : OG0005967 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005967_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT4G30825 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | OrthoFinder output from all 47 species | |
| Adi_g016371 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g01555 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g01078 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g14519 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aop_g10911 | No alias | not classified & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aop_g21865 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene12777.t1 | Aspi01Gene12777 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g12627 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.16G031400.1 | Ceric.16G031400 | not classified & original description: pacid=50589889... | 0.05 | OrthoFinder output from all 47 species | |
| Dac_g39665 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g06462 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g13616 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g05044 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Gb_06104 | No alias | Pentatricopeptide repeat-containing protein At4g30825,... | 0.04 | OrthoFinder output from all 47 species | |
| MA_187850g0010 | No alias | Pentatricopeptide repeat-containing protein At4g30825,... | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g19610 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g36090 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g58424 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g09709 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g33644 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0039.g012097 | No alias | not classified & original description: CDS=661-1995 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0063.g015623 | No alias | not classified & original description: CDS=1-2238 | 0.03 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0149.g023267 | No alias | not classified & original description: CDS=111-2933 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g13761 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g25071 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e040095_P002 | Zm00001e040095 | Pentatricopeptide repeat-containing protein At4g30825,... | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004556 | alpha-amylase activity | IEP | HCCA |
| MF | GO:0005509 | calcium ion binding | IEP | HCCA |
| CC | GO:0009507 | chloroplast | IEP | HCCA |
| CC | GO:0009536 | plastid | IEP | HCCA |
| MF | GO:0016160 | amylase activity | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 341 | 388 |
| IPR002885 | Pentatricopeptide_repeat | 764 | 805 |
| IPR002885 | Pentatricopeptide_repeat | 834 | 877 |
| IPR002885 | Pentatricopeptide_repeat | 660 | 689 |
| IPR002885 | Pentatricopeptide_repeat | 315 | 339 |
| IPR002885 | Pentatricopeptide_repeat | 556 | 582 |
| IPR002885 | Pentatricopeptide_repeat | 244 | 270 |
| IPR002885 | Pentatricopeptide_repeat | 274 | 303 |
| IPR002885 | Pentatricopeptide_repeat | 695 | 718 |
| IPR002885 | Pentatricopeptide_repeat | 206 | 235 |
| IPR002885 | Pentatricopeptide_repeat | 728 | 753 |
| IPR002885 | Pentatricopeptide_repeat | 590 | 621 |
| No external refs found! |