1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00064p00178110

AMTR_s00064p00178110 (RHD3,...)


Aliases : RHD3, evm_27.TU.AmTr_v1.0_scaffold00064.80

Description : Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica


Gene families : OG0001619 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001619_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00064p00178110
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
Ala_g18669 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.02 OrthoFinder output from all 47 species
Ceric.05G037600.1 Ceric.05G037600 ER tubulae formation factor *(RHD3/RL) & original... 0.02 OrthoFinder output from all 47 species
Ceric.36G000900.1 Ceric.36G000900 ER tubulae formation factor *(RHD3/RL) & original... 0.02 OrthoFinder output from all 47 species
Gb_27309 RHD3 ER tubulae formation factor (RHD3/RL) 0.03 OrthoFinder output from all 47 species
Gb_39091 No alias ER tubulae formation factor (RHD3/RL) 0.03 OrthoFinder output from all 47 species
Len_g08736 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.02 OrthoFinder output from all 47 species
MA_10428984g0020 RHD3 ER tubulae formation factor (RHD3/RL) 0.03 OrthoFinder output from all 47 species
Pir_g01679 No alias ER tubulae formation factor *(RHD3/RL) & original... 0.02 OrthoFinder output from all 47 species
Spa_g26817 RHD3 ER tubulae formation factor *(RHD3/RL) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003872 6-phosphofructokinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005945 6-phosphofructokinase complex IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0008443 phosphofructokinase activity IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR008803 RHD3/Sey1 44 761
No external refs found!