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  5. AMTR_s00061p00171020

AMTR_s00061p00171020 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00061.180

Description : Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0000596 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000596_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00061p00171020
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Aev_g48359 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ala_g14315 CRM3, HCF152 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g38904 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g18449 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g34345 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
GSVIVT01036253001 No alias Pentatricopeptide repeat-containing protein At1g12620... 0.01 OrthoFinder output from all 47 species
Len_g55579 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_6283623g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
MA_7256709g0010 No alias Pentatricopeptide repeat-containing protein At1g05670,... 0.01 OrthoFinder output from all 47 species
Ore_g30153 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo94312 No alias Pentatricopeptide repeat-containing protein At1g09900... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 110 126
IPR002885 Pentatricopeptide_repeat 4 36
IPR002885 Pentatricopeptide_repeat 43 92
No external refs found!