AMTR_s00061p00078220 (ARF21,...)

Aliases : ARF21, evm_27.TU.AmTr_v1.0_scaffold00061.55

Description : Putative auxin response factor 21 OS=Arabidopsis thaliana

Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00061p00078220

Target	Alias	Description	ECC score	Gene Family Method
Adi_g054964	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g26256	ARF16	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g17172	ARF6	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.32G056500.1	ARF16, Ceric.32G056500	ARF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Dde_g16727	ARF16	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g14944	ARF6	ARF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g31517	ARF1	ARF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e013191_P001	ARF19, IAA22,...	transcription factor (ARF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0007275	multicellular organism development	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
MF	GO:0045735	nutrient reservoir activity	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003311	AUX_IAA	18	111

External Links

No external refs found!