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  5. AMTR_s00060p00183840

AMTR_s00060p00183840 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00060.120

No description available


Gene families : OG0020070 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0020070_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00060p00183840
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
AT5G10210 No alias CONTAINS InterPro DOMAIN/s: C2 calcium-dependent... 0.04 OrthoFinder output from all 47 species
AT5G65030 No alias unknown protein; BEST Arabidopsis thaliana protein match... 0.03 OrthoFinder output from all 47 species
Solyc03g078620.1.1 Solyc03g078620 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Solyc04g055130.1.1 Solyc04g055130 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Solyc04g055140.1.1 Solyc04g055140 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Solyc04g055150.1.1 Solyc04g055150 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR000008 C2_dom 14 88
No external refs found!