1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00060p00178160

AMTR_s00060p00178160 (PUM7, APUM7,...)


Aliases : PUM7, APUM7, evm_27.TU.AmTr_v1.0_scaffold00060.115

Description : Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0000858 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000858_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00060p00178160

Target Alias Description ECC score Gene Family Method Actions
Aev_g13809 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene63761.t1 APUM12, PUM12,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0040.g026500 APUM12, PUM12 not classified & original description: CDS=1-2874 0.02 OrthoFinder output from all 47 species
Ceric.39G043300.1 PUM7, APUM7,... not classified & original description: pacid=50583488... 0.02 OrthoFinder output from all 47 species
Dcu_g01979 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g44911 APUM12, PUM12 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002092 APUM12, PUM12 not classified & original description: CDS=226-2811 0.03 OrthoFinder output from all 47 species
Tin_g03517 APUM12, PUM12 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 837 870
IPR001313 Pumilio_RNA-bd_rpt 729 761
IPR001313 Pumilio_RNA-bd_rpt 694 718
IPR001313 Pumilio_RNA-bd_rpt 652 686
IPR001313 Pumilio_RNA-bd_rpt 766 788
No external refs found!