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  5. AMTR_s00059p00156460

AMTR_s00059p00156460 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00059.143

Description : Putative pentatricopeptide repeat-containing protein At1g19290 OS=Arabidopsis thaliana


Gene families : OG0002597 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002597_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00059p00156460
Cluster HCCA: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00141020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g01110... 0.05 OrthoFinder output from all 47 species
AMTR_s00061p00202160 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g55840... 0.04 OrthoFinder output from all 47 species
AT4G26680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
GSVIVT01018339001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_03188 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.02 OrthoFinder output from all 47 species
Gb_07698 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.04 OrthoFinder output from all 47 species
Gb_08861 No alias Pentatricopeptide repeat-containing protein At1g09820... 0.04 OrthoFinder output from all 47 species
Gb_13926 No alias group-II intron mitochondrial splicing factor (MISF26) 0.05 OrthoFinder output from all 47 species
Gb_26765 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Gb_28619 No alias Pentatricopeptide repeat-containing protein At1g11710,... 0.05 OrthoFinder output from all 47 species
Gb_30066 EMB2745 Pentatricopeptide repeat-containing protein At5g39710... 0.03 OrthoFinder output from all 47 species
Gb_41726 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.03 OrthoFinder output from all 47 species
MA_59385g0010 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.03 OrthoFinder output from all 47 species
Solyc02g021270.3.1 Solyc02g021270 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 207 239
IPR002885 Pentatricopeptide_repeat 908 938
IPR002885 Pentatricopeptide_repeat 594 623
IPR002885 Pentatricopeptide_repeat 309 358
IPR002885 Pentatricopeptide_repeat 415 462
IPR002885 Pentatricopeptide_repeat 730 777
IPR002885 Pentatricopeptide_repeat 520 569
IPR002885 Pentatricopeptide_repeat 243 287
IPR002885 Pentatricopeptide_repeat 625 673
IPR002885 Pentatricopeptide_repeat 835 884
IPR002885 Pentatricopeptide_repeat 377 409
IPR002885 Pentatricopeptide_repeat 796 827
IPR002885 Pentatricopeptide_repeat 481 513
No external refs found!