AMTR_s00059p00114020 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00059.89

No description available


Gene families : OG0009133 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0009133_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00059p00114020
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
AT1G75150 No alias unknown protein; Has 38228 Blast hits to 24529 proteins... 0.05 OrthoFinder output from all 47 species
Ala_g26641 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03190 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene61629.t1 Aspi01Gene61629 not classified & original description: none 0.1 OrthoFinder output from all 47 species
Ceric.32G007200.1 Ceric.32G007200 not classified & original description: pacid=50597738... 0.12 OrthoFinder output from all 47 species
Dac_g31278 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g13673 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
GSVIVT01009687001 No alias No description available 0.03 OrthoFinder output from all 47 species
Len_g57892 No alias not classified & original description: none 0.11 OrthoFinder output from all 47 species
Lfl_g25659 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
MA_10285g0010 No alias no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
Mp5g13410.1 No alias no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
Nbi_g01318 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g40913 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0072.g016943 No alias not classified & original description: CDS=1-2439 0.07 OrthoFinder output from all 47 species
Smo414278 No alias No description available 0.09 OrthoFinder output from all 47 species
Solyc07g025380.3.1 Solyc07g025380 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Tin_g10605 No alias not classified & original description: none 0.08 OrthoFinder output from all 47 species
Zm00001e006116_P001 Zm00001e006116 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007090 obsolete regulation of S phase of mitotic cell cycle IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!