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  5. AMTR_s00059p00033240

AMTR_s00059p00033240 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00059.15

No description available


Gene families : OG0007148 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00059p00033240

Target Alias Description ECC score Gene Family Method Actions
Adi_g060436 No alias component *(mL43) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Aop_g01466 No alias component *(mL43) of large mitoribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Lfl_g21504 No alias component *(mL43) of large mitoribosomal-subunit... 0.02 OrthoFinder output from all 47 species
Solyc04g014390.3.1 Solyc04g014390 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR007741 Ribosome/NADH_DH 26 76
No external refs found!