AMTR_s00058p00187000 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00058.183

Description : Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00058p00187000

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00268120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g29760,... 0.04 OrthoFinder output from all 47 species
AMTR_s00003p00222920 No alias Putative pentatricopeptide repeat-containing protein... 0.06 OrthoFinder output from all 47 species
AMTR_s00011p00233950 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.03 OrthoFinder output from all 47 species
AMTR_s00011p00266560 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 OrthoFinder output from all 47 species
AMTR_s00029p00042600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.06 OrthoFinder output from all 47 species
AMTR_s00031p00067070 emb1899, EMB175, EMB166 Pentatricopeptide repeat-containing protein At5g03800... 0.03 OrthoFinder output from all 47 species
AMTR_s00032p00190360 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
AMTR_s00039p00130050 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
AMTR_s00049p00210350 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
AMTR_s00155p00018120 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g21300... 0.04 OrthoFinder output from all 47 species
AMTR_s00177p00030580 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g12770... 0.04 OrthoFinder output from all 47 species
Adi_g004502 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g005702 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g041239 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g066055 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g074266 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g43288 PTAC9, OSB2 ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g48664 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07468 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13016 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g35746 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36508 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g10215 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18507 OTP84 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g19069 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g39732 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g06487 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g28205 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37589 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g04175 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0027.g023505 No alias not classified & original description: CDS=32-2620 0.06 OrthoFinder output from all 47 species
Azfi_s1721.g106131 No alias not classified & original description: CDS=1-2793 0.04 OrthoFinder output from all 47 species
Cba_g03281 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g07022 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g15519 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g37478 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g04271 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g14062 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g43242 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g24902 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g36765 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01021403001 No alias Pentatricopeptide repeat-containing protein At3g14730... 0.05 OrthoFinder output from all 47 species
Len_g33480 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15230 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g26631 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g35200 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g43136 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10208 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g24651 No aliasnot classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g25468 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g29911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g32824 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g35403 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g23106 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g23595 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g26402 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g44704 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g52632 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g53359 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g59344 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29293 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g088650.1.1 Solyc02g088650 Pentatricopeptide repeat-containing protein At5g39350... 0.05 OrthoFinder output from all 47 species
Solyc03g116000.1.1 Solyc03g116000 Pentatricopeptide repeat-containing protein At3g47530... 0.03 OrthoFinder output from all 47 species
Solyc06g066080.1.1 OTP85, Solyc06g066080 Pentatricopeptide repeat-containing protein At4g21065... 0.04 OrthoFinder output from all 47 species
Solyc11g007230.1.1 Solyc11g007230 Pentatricopeptide repeat-containing protein At3g53360,... 0.04 OrthoFinder output from all 47 species
Spa_g23544 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g28951 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g51341 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g14912 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 73 102
IPR002885 Pentatricopeptide_repeat 247 269
IPR002885 Pentatricopeptide_repeat 175 201
IPR002885 Pentatricopeptide_repeat 272 320
IPR002885 Pentatricopeptide_repeat 146 173
IPR002885 Pentatricopeptide_repeat 412 443
No external refs found!