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  5. AMTR_s00058p00177950

AMTR_s00058p00177950 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00058.168

No description available


Gene families : OG0003305 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003305_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00058p00177950

Target Alias Description ECC score Gene Family Method Actions
Adi_g087434 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g10175 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g21891 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene65044.t2 Aspi01Gene65044 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene65045.t1 Aspi01Gene65045 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g03055 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g33358 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os03g49960.1 LOC_Os03g49960 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Len_g47787 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g35288 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g06572 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0115.g020947 No alias not classified & original description: CDS=1-981 0.03 OrthoFinder output from all 47 species
Smo443175 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc02g063050.3.1 Solyc02g063050 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Zm00001e012574_P001 Zm00001e012574 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e029723_P004 Zm00001e029723 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Zm00001e037779_P002 Zm00001e037779 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
MF GO:0000149 SNARE binding IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
CC GO:0000922 spindle pole IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004221 obsolete ubiquitin thiolesterase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005815 microtubule organizing center IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0019905 syntaxin binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA

No InterPro domains available for this sequence

No external refs found!