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  5. AMTR_s00058p00125550

AMTR_s00058p00125550 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00058.89

No description available


Gene families : OG0001079 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001079_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00058p00125550
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AT3G01560 No alias Protein of unknown function (DUF1421) 0.02 OrthoFinder output from all 47 species
Adi_g020701 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g022095 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g089023 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g23754 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g57006 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g61727 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g22008 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene13508.t1 Aspi01Gene13508 E4 polyubiquitination factor *(UAP) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0054.g033608 No alias E4 polyubiquitination factor *(UAP) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0157.g053832 No alias E4 polyubiquitination factor *(UAP) & original... 0.04 OrthoFinder output from all 47 species
Cba_g11772 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.12G093800.1 Ceric.12G093800 E4 polyubiquitination factor *(UAP) & original... 0.02 OrthoFinder output from all 47 species
Dac_g11754 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g33712 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g02947 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g06988 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g20631 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01032424001 No alias No description available 0.03 OrthoFinder output from all 47 species
Len_g19049 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.04 OrthoFinder output from all 47 species
MA_72903g0010 No alias no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
MA_944383g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g44255 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g28018 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0098.g019490 No alias E4 polyubiquitination factor *(UAP) & original... 0.02 OrthoFinder output from all 47 species
Sam_g07652 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g12481 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g12482 No alias E4 polyubiquitination factor *(UAP) & original description: none 0.02 OrthoFinder output from all 47 species
Smo446314 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc07g053990.4.1 Solyc07g053990 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Tin_g10516 No alias E4 polyubiquiTination factor *(UAP) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e016775_P001 Zm00001e016775 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e025871_P001 Zm00001e025871 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e029034_P002 Zm00001e029034 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
CC GO:0000151 ubiquitin ligase complex IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
BP GO:0006470 protein dephosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
MF GO:0015267 channel activity IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
MF GO:0022803 passive transmembrane transporter activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0051640 organelle localization IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR010820 DUF1421 97 309
No external refs found!