1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00057p00210380

AMTR_s00057p00210380 (AtATG18a,...)


Aliases : AtATG18a, evm_27.TU.AmTr_v1.0_scaffold00057.259

Description : Vesicle trafficking.autophagosome formation.ATG9-2-18 membrane shuttling complex.ATG18 component


Gene families : OG0000802 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000802_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00057p00210380
Cluster HCCA: Cluster_115

Target Alias Description ECC score Gene Family Method Actions
Cba_g01058 ATG18D, ATATG18D component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.01 OrthoFinder output from all 47 species
Msp_g15254 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.01 OrthoFinder output from all 47 species
Pnu_g06391 ATG18C, ATATG18C component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005508 ATG18C, ATATG18C component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.01 OrthoFinder output from all 47 species
Smo171378 ATG18D, ATATG18D Vesicle trafficking.autophagosome formation.ATG9-2-18... 0.03 OrthoFinder output from all 47 species
Spa_g09790 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.03 OrthoFinder output from all 47 species
Spa_g47962 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.04 OrthoFinder output from all 47 species
Tin_g06773 AtATG18a component *(ATG18) of autophagosome ATG9-2-18 membrane... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001680 WD40_repeat 344 371
No external refs found!