AMTR_s00057p00193570 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00057.218

Description : RNA biosynthesis.transcriptional activation.C3H zinc finger transcription factor

Gene families : OG0000297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000297_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00057p00193570

Target	Alias	Description	ECC score	Gene Family Method
Ala_g13666	No alias	regulatory protein of RNA homeostasis & original...	0.02	OrthoFinder output from all 47 species
LOC_Os01g15460.1	LOC_Os01g15460	C3H zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
MA_1139g0010	ZFN1	C3H zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Pnu_g13327	No alias	regulatory protein of RNA homeostasis & original...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000571	Znf_CCCH	343	365
IPR000571	Znf_CCCH	294	320
IPR000571	Znf_CCCH	96	120
IPR000571	Znf_CCCH	49	73
IPR000571	Znf_CCCH	143	166

External Links

No external refs found!