1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00056p00140820

AMTR_s00056p00140820 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00056.113

Description : Senescence/dehydration-associated protein At4g35985, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0001274 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001274_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00056p00140820
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AT3G21600 No alias Senescence/dehydration-associated protein-related 0.04 OrthoFinder output from all 47 species
Adi_g024818 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g046413 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g01026 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g09705 ERD7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08353 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Gb_39732 ERD7 Senescence/dehydration-associated protein At4g35985,... 0.03 OrthoFinder output from all 47 species
LOC_Os01g52480.1 LOC_Os01g52480 Senescence/dehydration-associated protein At4g35985,... 0.04 OrthoFinder output from all 47 species
Len_g16271 ERD7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g24784 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g00845 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g083690.2.1 ERD7, Solyc02g083690 Protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic... 0.03 OrthoFinder output from all 47 species
Solyc12g008460.2.1 Solyc12g008460 Senescence/dehydration-associated protein At4g35985,... 0.05 OrthoFinder output from all 47 species
Spa_g02652 ERD7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e028202_P001 Zm00001e028202 Senescence/dehydration-associated protein At4g35985,... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!