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  5. AMTR_s00056p00140490

AMTR_s00056p00140490 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00056.112

Description : Senescence/dehydration-associated protein At4g35985, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0001274 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001274_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00056p00140490
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AT3G21600 No alias Senescence/dehydration-associated protein-related 0.03 OrthoFinder output from all 47 species
Aev_g03179 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g17339 ERD7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.17G025800.1 Ceric.17G025800 not classified & original description: pacid=50618249... 0.03 OrthoFinder output from all 47 species
Dac_g09889 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11231 ERD7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g08353 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_39732 ERD7 Senescence/dehydration-associated protein At4g35985,... 0.03 OrthoFinder output from all 47 species
LOC_Os01g52480.1 LOC_Os01g52480 Senescence/dehydration-associated protein At4g35985,... 0.03 OrthoFinder output from all 47 species
Len_g24784 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g00845 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g062050.3.1 Solyc02g062050 Senescence/dehydration-associated protein At4g35985,... 0.03 OrthoFinder output from all 47 species
Solyc02g083690.2.1 ERD7, Solyc02g083690 Protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic... 0.04 OrthoFinder output from all 47 species
Solyc12g008460.2.1 Solyc12g008460 Senescence/dehydration-associated protein At4g35985,... 0.04 OrthoFinder output from all 47 species
Zm00001e028202_P001 Zm00001e028202 Senescence/dehydration-associated protein At4g35985,... 0.05 OrthoFinder output from all 47 species
Zm00001e038603_P001 ERD7, Zm00001e038603 Protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043531 ADP binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR009686 Senescence/spartin_C 1 112
No external refs found!