AMTR_s00056p00135710 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00056.107

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS7 component

Gene families : OG0001505 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001505_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00056p00135710

Target	Alias	Description	ECC score	Gene Family Method
AT3G02560	No alias	Ribosomal protein S7e family protein	0.09	OrthoFinder output from all 47 species
AT5G16130	No alias	Ribosomal protein S7e family protein	0.07	OrthoFinder output from all 47 species
Adi_g051929	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ala_g21941	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Ala_g34320	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ala_g36863	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Als_g24302	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Als_g27864	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aob_g00804	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aop_g50244	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Aop_g68949	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Azfi_s0028.g023989	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Azfi_s0164.g054279	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Cba_g08926	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Ceric.32G072400.1	Ceric.32G072400	component *(eS7) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Ceric.35G018000.1	Ceric.35G018000	component *(eS7) of small ribosomal-subunit (SSU)...	0.12	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021682.9	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	OrthoFinder output from all 47 species
Cre12.g498900	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Dcu_g18305	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g29104	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g35832	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Dde_g13648	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ehy_g06429	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ehy_g07360	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
GSVIVT01008307001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
GSVIVT01031018001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Gb_33823	No alias	component RPS7 of SSU proteome	0.06	OrthoFinder output from all 47 species
LOC_Os03g18570.1	LOC_Os03g18570	component RPS7 of SSU proteome	0.11	OrthoFinder output from all 47 species
LOC_Os03g18580.1	LOC_Os03g18580	component RPS7 of SSU proteome	0.1	OrthoFinder output from all 47 species
LOC_Os05g27940.1	LOC_Os05g27940	component RPS7 of SSU proteome	0.03	OrthoFinder output from all 47 species
Len_g10576	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Len_g31152	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g37499	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Mp6g08120.1	No alias	component RPS7 of SSU proteome	0.15	OrthoFinder output from all 47 species
Nbi_g01754	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ore_g04569	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pp3c20_1360V3.1	Pp3c20_1360	Ribosomal protein S7e family protein	0.11	OrthoFinder output from all 47 species
Pp3c24_18220V3.1	Pp3c24_18220	Ribosomal protein S7e family protein	0.07	OrthoFinder output from all 47 species
Pp3c8_22480V3.1	Pp3c8_22480	Ribosomal protein S7e family protein	0.04	OrthoFinder output from all 47 species
Ppi_g37809	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g46098	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0074.g017312	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g01537	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Sam_g52973	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Smo148446	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.06	OrthoFinder output from all 47 species
Solyc03g119360.3.1	Solyc03g119360	component RPS7 of SSU proteome	0.1	OrthoFinder output from all 47 species
Solyc06g069090.3.1	Solyc06g069090	component RPS7 of SSU proteome	0.1	OrthoFinder output from all 47 species
Spa_g16479	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Spa_g22409	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Spa_g43257	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Tin_g02457	No alias	component *(eS7) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Zm00001e001349_P002	Zm00001e001349	component RPS7 of SSU proteome	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003942	N-acetyl-gamma-glutamyl-phosphate reductase activity	IEP	HCCA
CC	GO:0005737	cytoplasm	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
MF	GO:0051287	NAD binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000554	Ribosomal_S7e	6	189

External Links

No external refs found!

AMTR_s00056p00135710 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation