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  5. AMTR_s00056p00124480

AMTR_s00056p00124480 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00056.93

Description : Protein degradation.peptide tagging.Ubiquitin (UBQ)-anchor addition (ubiquitylation).UBQ-ligase E3 activities.RING-domain E3 ligase activities.RING-H2-type E3 ligase


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00056p00124480

Target Alias Description ECC score Gene Family Method Actions
AT2G01150 RHA2B RING-H2 finger protein 2B 0.06 OrthoFinder output from all 47 species
Adi_g024648 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g050778 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aev_g15196 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Aev_g24713 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g15749 RHA3A not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g32159 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aop_g00454 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Aop_g30116 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g57707 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Cba_g03833 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ceric.03G012300.1 BRH1, Ceric.03G012300 not classified & original description: pacid=50572071... 0.03 OrthoFinder output from all 47 species
Ceric.05G063000.1 Ceric.05G063000 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ceric.07G057400.1 Ceric.07G057400 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ceric.07G057800.1 ATL6, Ceric.07G057800 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ceric.07G058000.1 Ceric.07G058000 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.09G032300.1 ATL6, Ceric.09G032300 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.08 OrthoFinder output from all 47 species
Ceric.09G083500.1 Ceric.09G083500 not classified & original description: pacid=50586830... 0.04 OrthoFinder output from all 47 species
Ceric.10G018700.1 Ceric.10G018700 not classified & original description: pacid=50612549... 0.02 OrthoFinder output from all 47 species
Ceric.13G075200.1 Ceric.13G075200 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ceric.22G061400.1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dac_g03204 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Dac_g06243 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dac_g16302 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g39871 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dcu_g08522 BRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g49887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g01399 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g19799 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g23804 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Dde_g38231 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ehy_g05771 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ehy_g06581 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ehy_g26468 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g29562 ATL2, TL2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g30092 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
GSVIVT01032684001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
GSVIVT01038717001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
Gb_04647 ATL2, TL2 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Gb_05381 No alias RHA2 signal transducer of abscisic acid perception 0.03 OrthoFinder output from all 47 species
Gb_14777 No alias RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Gb_14786 No alias RING-H2-class E3 ligase 0.08 OrthoFinder output from all 47 species
Gb_14788 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Gb_30879 XERICO Probable E3 ubiquitin-protein ligase XERICO... 0.04 OrthoFinder output from all 47 species
Gb_40644 BRH1 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
LOC_Os02g44700.1 LOC_Os02g44700 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
LOC_Os04g37730.1 LOC_Os04g37730 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os06g45580.1 RHA3A, LOC_Os06g45580 RING-H2 finger protein ATL73 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Lfl_g10385 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Lfl_g17168 ATRING1, RING1 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
MA_101154g0010 ATL2, TL2 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_10426163g0010 RHA3B no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_10426834g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_117647g0010 No alias RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
MA_15116g0010 BRH1 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
MA_159453g0010 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_229590g0010 No alias RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_280399g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_308999g0010 ATL2, TL2 RING-H2 finger protein ATL3 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_43543g0010 ATL2, TL2 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_98187g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Msp_g07983 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g44562 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g01961 RHA3B not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g19208 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Nbi_g22098 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ore_g06664 BRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g40735 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Pir_g27082 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Ppi_g57007 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015199 ATL43 not classified & original description: CDS=1-1395 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0138.g022556 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0149.g023284 No alias not classified & original description: CDS=1-567 0.03 OrthoFinder output from all 47 species
Sam_g01312 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18767 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Sam_g31319 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Smo109459 No alias Protein degradation.peptide tagging.Ubiquitin... 0.08 OrthoFinder output from all 47 species
Solyc01g091770.4.1 Solyc01g091770 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc08g082680.3.1 Solyc08g082680 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Solyc12g087860.3.1 ATL6, Solyc12g087860 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Solyc12g094385.1.1 Solyc12g094385 E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g01259 BRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g09499 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Spa_g10479 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g21253 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Spa_g29391 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g29981 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g42431 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Tin_g06774 No alias RING-H2-class ATL-subclass E3 ubiquiTin ligase &... 0.02 OrthoFinder output from all 47 species
Tin_g16305 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g20702 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquiTin ligase &... 0.04 OrthoFinder output from all 47 species
Zm00001e007208_P002 Zm00001e007208 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e015449_P001 Zm00001e015449 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Zm00001e015495_P001 Zm00001e015495 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e020958_P001 Zm00001e020958 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 47 91
No external refs found!