AMTR_s00056p00110240 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00056.82

Description : Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana

Gene families : OG0003530 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003530_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00056p00110240

Target	Alias	Description	ECC score	Gene Family Method
AT2G19910	No alias	RNA-dependent RNA polymerase family protein	0.03	OrthoFinder output from all 47 species
AT2G19920	No alias	RNA-dependent RNA polymerase family protein	0.03	OrthoFinder output from all 47 species
Aop_g36183	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene31914.t1	Aspi01Gene31914	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.03G035200.1	Ceric.03G035200	not classified & original description: pacid=50572865...	0.04	OrthoFinder output from all 47 species
Dcu_g44652	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_10434272g0010	No alias	Probable RNA-dependent RNA polymerase 4 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Nbi_g09401	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0045.g013281	No alias	not classified & original description: CDS=648-3506	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003968	RNA-dependent RNA polymerase activity	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005875	microtubule associated complex	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007855	RNA-dep_RNA_pol_euk-typ	212	846

External Links

No external refs found!