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  5. AMTR_s00055p00182870

AMTR_s00055p00182870 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00055.100

No description available


Gene families : OG0006364 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006364_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00055p00182870

Target Alias Description ECC score Gene Family Method Actions
AT4G12590 No alias Protein of unknown function DUF106, transmembrane 0.05 OrthoFinder output from all 47 species
Ceric.10G075500.1 Ceric.10G075500 not classified & original description: pacid=50613374... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020961.133 No alias No description available 0.01 OrthoFinder output from all 47 species
LOC_Os09g32220.1 LOC_Os09g32220 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_2494g0010 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Ore_g07210 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g054100.3.1 Solyc05g054100 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Zm00001e010090_P001 Zm00001e010090 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
CC GO:0005674 transcription factor TFIIF complex IEP HCCA
CC GO:0005853 eukaryotic translation elongation factor 1 complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019725 cellular homeostasis IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042592 homeostatic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045454 cell redox homeostasis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR002809 EMC3/TMCO1 4 192
No external refs found!