AMTR_s00053p00190690 (ATINO80, INO80,...)

Aliases : ATINO80, INO80, evm_27.TU.AmTr_v1.0_scaffold00053.139

Description : Chromatin organisation.chromatin remodeling complexes.ATPase core components.Swr1-like group.Ino80 chromatin remodeling factor

Gene families : OG0003922 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003922_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00053p00190690

Target	Alias	Description	ECC score	Gene Family Method
Ala_g22698	ATINO80, INO80	ATPase component *(Ino80) of chromatin remodelling...	0.06	OrthoFinder output from all 47 species
Als_g16557	ATINO80, INO80	ATPase component *(Ino80) of chromatin remodelling...	0.03	OrthoFinder output from all 47 species
Als_g16558	ATINO80, INO80	ATPase component *(Ino80) of chromatin remodelling...	0.02	OrthoFinder output from all 47 species
Aob_g12486	ATINO80, INO80	ATPase component *(Ino80) of chromatin remodelling...	0.03	OrthoFinder output from all 47 species
Aop_g19078	ATINO80, INO80	ATPase component *(Ino80) of chromatin remodelling...	0.06	OrthoFinder output from all 47 species
Ceric.02G047900.1	ATINO80, INO80,...	ATPase component *(Ino80) of chromatin remodelling...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021501.9	ATINO80, INO80	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder output from all 47 species
Dac_g14057	ATINO80, INO80	ATPase component *(Ino80) of chromatin remodelling...	0.02	OrthoFinder output from all 47 species
Dcu_g11743	ATINO80, INO80	ATPase component *(Ino80) of chromatin remodelling...	0.06	OrthoFinder output from all 47 species
Dde_g25805	ATINO80, INO80	ATPase component *(Ino80) of chromatin remodelling...	0.06	OrthoFinder output from all 47 species
Ehy_g12559	ATINO80, INO80	ATPase component *(Ino80) of chromatin remodelling...	0.05	OrthoFinder output from all 47 species
GSVIVT01033231001	ATINO80, INO80	Chromatin organisation.chromatin remodeling...	0.07	OrthoFinder output from all 47 species
Gb_04007	ATINO80, INO80	ATPase component Ino80 of chromatin remodelling complex	0.05	OrthoFinder output from all 47 species
Lfl_g05043	ATINO80, INO80	ATPase component *(Ino80) of chromatin remodelling...	0.05	OrthoFinder output from all 47 species
MA_3312g0010	ATINO80, INO80	ATPase component Ino80 of chromatin remodelling complex	0.05	OrthoFinder output from all 47 species
Mp8g00130.1	ATINO80, INO80	ATPase component Ino80 of chromatin remodelling complex	0.04	OrthoFinder output from all 47 species
Nbi_g02503	ATINO80, INO80	ATPase component *(Ino80) of chromatin remodelling...	0.02	OrthoFinder output from all 47 species
Ore_g02728	ATINO80, INO80	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g16643	ATINO80, INO80	ATPase component *(Ino80) of chromatin remodelling...	0.03	OrthoFinder output from all 47 species
Pir_g13631	ATINO80, INO80	ATPase component *(Ino80) of chromatin remodelling...	0.02	OrthoFinder output from all 47 species
Ppi_g08475	ATINO80, INO80	ATPase component *(Ino80) of chromatin remodelling...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0148.g023246	ATINO80, INO80	ATPase component *(Ino80) of chromatin remodelling...	0.06	OrthoFinder output from all 47 species
Sam_g11608	No alias	ATPase component *(Ino80) of chromatin remodelling...	0.03	OrthoFinder output from all 47 species
Smo444050	ATINO80, INO80	Chromatin organisation.chromatin remodeling...	0.05	OrthoFinder output from all 47 species
Solyc04g016370.3.1	ATINO80, INO80,...	ATPase component Ino80 of chromatin remodelling complex	0.04	OrthoFinder output from all 47 species
Zm00001e001678_P001	ATINO80, INO80,...	ATPase component Ino80 of chromatin remodelling complex	0.06	OrthoFinder output from all 47 species
Zm00001e038194_P002	ATINO80, INO80,...	ATPase component Ino80 of chromatin remodelling complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003725	double-stranded RNA binding	IEP	HCCA
MF	GO:0004221	obsolete ubiquitin thiolesterase activity	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA
MF	GO:0030247	polysaccharide binding	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
MF	GO:2001070	starch binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	1281	1359
IPR020838	DBINO	376	512
IPR000330	SNF2_N	627	926

External Links

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AMTR_s00053p00190690 (ATINO80, INO80,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation