AMTR_s00053p00163590 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00053.111

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL10a component

Gene families : OG0001297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001297_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00053p00163590

Target	Alias	Description	ECC score	Gene Family Method
AT1G08360	No alias	Ribosomal protein L1p/L10e family	0.16	OrthoFinder output from all 47 species
AT2G27530	PGY1	Ribosomal protein L1p/L10e family	0.13	OrthoFinder output from all 47 species
AT5G22440	No alias	Ribosomal protein L1p/L10e family	0.09	OrthoFinder output from all 47 species
Adi_g012505	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Adi_g053018	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g106775	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Aev_g36055	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ala_g18263	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ala_g38886	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Aob_g07010	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Aop_g02409	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Aspi01Gene41447.t1	PGY1, Aspi01Gene41447	component *(uL1) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0022.g016098	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Azfi_s0035.g025561	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Cba_g36488	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cba_g66373	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Ceric.18G006900.1	Ceric.18G006900	component *(uL1) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ceric.34G055700.1	Ceric.34G055700	component *(uL1) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020697.31	No alias	60S ribosomal protein L10a OS=Oryza sativa subsp. japonica	0.06	OrthoFinder output from all 47 species
Cre02.g101350	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.13	OrthoFinder output from all 47 species
Dac_g03072	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Dac_g03616	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Dac_g25407	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Dcu_g03488	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Dcu_g51102	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
GSVIVT01033841001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.1	OrthoFinder output from all 47 species
GSVIVT01036128001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.08	OrthoFinder output from all 47 species
Gb_13744	No alias	component RPL10a of LSU proteome component	0.04	OrthoFinder output from all 47 species
Gb_28506	No alias	component RPL10a of LSU proteome component	0.1	OrthoFinder output from all 47 species
LOC_Os01g64090.1	LOC_Os01g64090	component RPL10a of LSU proteome component	0.09	OrthoFinder output from all 47 species
LOC_Os02g21660.1	LOC_Os02g21660	component RPL10a of LSU proteome component	0.11	OrthoFinder output from all 47 species
LOC_Os08g44380.1	LOC_Os08g44380	component RPL10a of LSU proteome component	0.05	OrthoFinder output from all 47 species
LOC_Os08g44450.2	LOC_Os08g44450	component RPL10a of LSU proteome component	0.04	OrthoFinder output from all 47 species
Len_g04149	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Len_g07945	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Lfl_g26241	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
MA_12000g0010	No alias	component RPL10a of LSU proteome component	0.04	OrthoFinder output from all 47 species
MA_71921g0010	No alias	component RPL10a of LSU proteome component	0.15	OrthoFinder output from all 47 species
Mp3g07870.1	No alias	component RPL10a of LSU proteome component	0.12	OrthoFinder output from all 47 species
Msp_g00232	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Msp_g39894	PGY1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g03987	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Pir_g18372	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Pp3c20_19190V3.1	Pp3c20_19190	Ribosomal protein L1p/L10e family	0.05	OrthoFinder output from all 47 species
Pp3c23_12730V3.1	Pp3c23_12730	Ribosomal protein L1p/L10e family	0.02	OrthoFinder output from all 47 species
Ppi_g26683	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Ppi_g27325	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g34689	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0106.g020220	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g12736	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Sam_g26155	No alias	component *(uL1) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Smo230302	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Solyc01g009520.4.1	Solyc01g009520	component RPL10a of LSU proteome component	0.09	OrthoFinder output from all 47 species
Solyc06g074300.4.1	Solyc06g074300	component RPL10a of LSU proteome component	0.15	OrthoFinder output from all 47 species
Solyc11g068420.2.1	Solyc11g068420	component RPL10a of LSU proteome component	0.14	OrthoFinder output from all 47 species
Spa_g08346	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Spa_g08347	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.13	OrthoFinder output from all 47 species
Spa_g08353	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Spa_g53937	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Tin_g10501	PGY1	component *(uL1) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Zm00001e019205_P001	Zm00001e019205	component RPL10a of LSU proteome component	0.11	OrthoFinder output from all 47 species
Zm00001e022063_P001	Zm00001e022063	component RPL10a of LSU proteome component	0.11	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	IEA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0005048	signal sequence binding	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	HCCA
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
CC	GO:0016272	prefoldin complex	IEP	HCCA
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
MF	GO:0030942	endoplasmic reticulum signal peptide binding	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
MF	GO:0042277	peptide binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0045047	protein targeting to ER	IEP	HCCA
MF	GO:0047800	cysteamine dioxygenase activity	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002143	Ribosomal_L1	21	211

External Links

No external refs found!

AMTR_s00053p00163590 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation