AMTR_s00049p00194290 (evm_27.TU.AmTr_v1.0_sc...)

Aliases : evm_27.TU.AmTr_v1.0_scaffold00049.204

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU proteome.RPS27 component

Gene families : OG0001813 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001813_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AMTR_s00049p00194290
Cluster	HCCA: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
AT2G45710	No alias	Zinc-binding ribosomal protein family protein	0.04	OrthoFinder output from all 47 species
AT3G61110	ARS27A, RS27A	ribosomal protein S27	0.07	OrthoFinder output from all 47 species
AT5G47930	No alias	Zinc-binding ribosomal protein family protein	0.07	OrthoFinder output from all 47 species
Aev_g42935	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Aop_g09346	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Aspi01Gene36661.t1	ARS27A, RS27A,...	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Azfi_s0004.g008655	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0182.g056413	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cba_g12663	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ceric.05G019300.1	ARS27A, RS27A,...	component *(eS27) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Ceric.26G067400.1	ARS27A, RS27A,...	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ceric.34G024800.1	ARS27A, RS27A,...	component *(eS27) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00001299.2	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
Cre12.g529400	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	OrthoFinder output from all 47 species
Dac_g00043	No alias	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Dac_g17983	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.1	OrthoFinder output from all 47 species
Dcu_g35625	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Dcu_g35656	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Dde_g00057	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
GSVIVT01001113001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.09	OrthoFinder output from all 47 species
GSVIVT01032964001	ARS27A, RS27A	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	OrthoFinder output from all 47 species
MA_54625g0010	ARS27A, RS27A	component RPS27 of SSU proteome	0.08	OrthoFinder output from all 47 species
Mp5g09510.1	No alias	component RPS27 of SSU proteome	0.07	OrthoFinder output from all 47 species
Msp_g15674	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Pir_g63736	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Pp3c1_15840V3.1	Pp3c1_15840	ribosomal protein S27	0.09	OrthoFinder output from all 47 species
Pp3c21_21540V3.1	Pp3c21_21540	ribosomal protein S27	0.01	OrthoFinder output from all 47 species
Pp3c22_18310V3.1	ARS27A, RS27A,...	ribosomal protein S27	0.06	OrthoFinder output from all 47 species
Pp3c2_20540V3.1	ARS27A, RS27A,...	ribosomal protein S27	0.07	OrthoFinder output from all 47 species
Sam_g47394	No alias	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Smo163947	ARS27A, RS27A	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	OrthoFinder output from all 47 species
Solyc01g008080.3.1	ARS27A, RS27A,...	component RPS27 of SSU proteome	0.04	OrthoFinder output from all 47 species
Solyc01g008090.4.1	ARS27A, RS27A,...	component RPS27 of SSU proteome	0.02	OrthoFinder output from all 47 species
Spa_g16488	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Tin_g24199	ARS27A, RS27A	component *(eS27) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Zm00001e024704_P001	ARS27A, RS27A,...	component RPS27 of SSU proteome	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	IEA	Interproscan
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004298	threonine-type endopeptidase activity	IEP	HCCA
CC	GO:0005839	proteasome core complex	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
MF	GO:0008233	peptidase activity	IEP	HCCA
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
MF	GO:0070003	threonine-type peptidase activity	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000592	Ribosomal_S27	30	84

External Links

No external refs found!

AMTR_s00049p00194290 (evm_27.TU.AmTr_v1.0_sc...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation